Vibrio diazotrophicus strain 60.27F

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio diazotrophicus strain 60.27F is characterized by having a single replicon, indicating a streamlined genomic structure. This strain is associated with the host organism Penaeus vannamei, commonly known as the Pacific white shrimp. The relationship between V. diazotrophicus and P. vannamei suggests potential implications for shrimp aquaculture, particularly in terms of nitrogen fixation capabilities that may benefit the host organism. The strain is documented under the accession number POSK00000000.1, which provides a reference point for genomic studies and further research on its biological functions and interactions. Given its association with a commercially significant aquaculture species, understanding the role of V. diazotrophicus in the shrimp's environment could lead to advancements in sustainable practices and improved health in aquaculture settings. The presence of V. diazotrophicus within the microbiome of Penaeus vannamei may contribute to the host's nutrient acquisition and overall well-being, potentially enhancing growth rates and disease resistance. This relationship underscores the ecological significance of microbial interactions in aquatic systems, highlighting the importance of studying such symbiotic organisms to optimize aquaculture productivity and environmental health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio diazotrophicus
Strainstrain 60.27F

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio diazotrophicus strain 60.27F
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatMarine
Biotic relationshipNot Available
Host(s)Penaeus vannamei
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio diazotrophicus strain 60.27F Contig042, whole genome

Gene Summary

Adenine Count

1318370 bp

Thymine Count

1334571 bp

Guanine Count

1039367 bp

Cytosine Count

999116 bp

Genome Length

4691444 bp

Protein-coding Genes

4163 genes

Non-Coding Genes

134 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
potassium transporter trkhC1N32_18890Not AvailableNegative4152885 - 415433052124.1
trk system potassium transporter trkaC1N32_18895Not AvailableNegative4154346 - 415572250082.1
16s rrna (cytosine(967)-c(5))-methyltransferaseC1N32_18900Not AvailableNegative4155785 - 415706547896.3
methionyl-trna formyltransferaseC1N32_18905Not AvailableNegative4157186 - 415813334240.0
peptide deformylaseC1N32_18910Not AvailableNegative4158150 - 415873722323.1
peptidoglycan-binding proteinC1N32_18915Not AvailablePositive4158729 - 415989843704.5
dna-protecting protein dpraC1N32_18920Not AvailablePositive4159911 - 416102640663.7
duf494 domain-containing proteinC1N32_18925Not AvailablePositive4161029 - 416150518413.2
dna topoisomeraseC1N32_18930Not AvailablePositive4161521 - 416208420594.8
5-(carboxyamino)imidazole ribonucleotide synthaseC1N32_18935Not AvailableNegative4162135 - 416326841140.2

Displaying genes 3771 – 3780 of 4297 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.