Vibrio diazotrophicus strain 60.27F

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio diazotrophicus strain 60.27F is characterized by having a single replicon, indicating a streamlined genomic structure. This strain is associated with the host organism Penaeus vannamei, commonly known as the Pacific white shrimp. The relationship between V. diazotrophicus and P. vannamei suggests potential implications for shrimp aquaculture, particularly in terms of nitrogen fixation capabilities that may benefit the host organism. The strain is documented under the accession number POSK00000000.1, which provides a reference point for genomic studies and further research on its biological functions and interactions. Given its association with a commercially significant aquaculture species, understanding the role of V. diazotrophicus in the shrimp's environment could lead to advancements in sustainable practices and improved health in aquaculture settings. The presence of V. diazotrophicus within the microbiome of Penaeus vannamei may contribute to the host's nutrient acquisition and overall well-being, potentially enhancing growth rates and disease resistance. This relationship underscores the ecological significance of microbial interactions in aquatic systems, highlighting the importance of studying such symbiotic organisms to optimize aquaculture productivity and environmental health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio diazotrophicus
Strainstrain 60.27F

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio diazotrophicus strain 60.27F
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatMarine
Biotic relationshipNot Available
Host(s)Penaeus vannamei
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio diazotrophicus strain 60.27F Contig042, whole genome

Gene Summary

Adenine Count

1318370 bp

Thymine Count

1334571 bp

Guanine Count

1039367 bp

Cytosine Count

999116 bp

Genome Length

4691444 bp

Protein-coding Genes

4163 genes

Non-Coding Genes

134 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type 3 dihydrofolate reductaseC1N32_17930Not AvailablePositive3972952 - 397343418051.7
bis(5'-nucleosyl)-tetraphosphataseC1N32_17935Not AvailableNegative3973491 - 397430931430.8
co2+/mg2+ efflux protein apagC1N32_17940Not AvailableNegative3974321 - 397470414351.2
16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferaseC1N32_17945Not AvailableNegative3974768 - 397559531225.8
4-hydroxythreonine-4-phosphate dehydrogenase pdxaC1N32_17950Not AvailableNegative3975609 - 397660135674.2
peptidylprolyl isomerase suraC1N32_17955Not AvailableNegative3976591 - 397788648061.1
lps assembly protein lptdC1N32_17960Not AvailableNegative3977933 - 398034191443.1
co-chaperone djlaC1N32_17965Not AvailablePositive3980489 - 398134931832.1
Trna-asnNot AvailableNot AvailablePositive3981483 - 3981558Not Available
Trna-thrNot AvailableNot AvailablePositive3981594 - 3981669Not Available

Displaying genes 3581 – 3590 of 4297 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.