Vibrio diazotrophicus strain 60.27F

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio diazotrophicus strain 60.27F is characterized by having a single replicon, indicating a streamlined genomic structure. This strain is associated with the host organism Penaeus vannamei, commonly known as the Pacific white shrimp. The relationship between V. diazotrophicus and P. vannamei suggests potential implications for shrimp aquaculture, particularly in terms of nitrogen fixation capabilities that may benefit the host organism. The strain is documented under the accession number POSK00000000.1, which provides a reference point for genomic studies and further research on its biological functions and interactions. Given its association with a commercially significant aquaculture species, understanding the role of V. diazotrophicus in the shrimp's environment could lead to advancements in sustainable practices and improved health in aquaculture settings. The presence of V. diazotrophicus within the microbiome of Penaeus vannamei may contribute to the host's nutrient acquisition and overall well-being, potentially enhancing growth rates and disease resistance. This relationship underscores the ecological significance of microbial interactions in aquatic systems, highlighting the importance of studying such symbiotic organisms to optimize aquaculture productivity and environmental health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio diazotrophicus
Strainstrain 60.27F

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio diazotrophicus strain 60.27F
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatMarine
Biotic relationshipNot Available
Host(s)Penaeus vannamei
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio diazotrophicus strain 60.27F Contig042, whole genome

Gene Summary

Adenine Count

1318370 bp

Thymine Count

1334571 bp

Guanine Count

1039367 bp

Cytosine Count

999116 bp

Genome Length

4691444 bp

Protein-coding Genes

4163 genes

Non-Coding Genes

134 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
heme lyase nrfefg subunit nrfeC1N32_15425Not AvailablePositive3421470 - 342342572302.1
dsbe family thiol:disulfide interchange proteinC1N32_15430Not AvailablePositive3423426 - 342398020766.2
cytochrome c-type biogenesis protein ccmhC1N32_15435Not AvailablePositive3423977 - 342445317798.4
c-type cytochrome biogenesis protein ccmiC1N32_15440Not AvailablePositive3424453 - 342567045075.1
abc transporterC1N32_15445Not AvailablePositive3425747 - 342650528129.0
short-chain dehydrogenaseC1N32_15450Not AvailableNegative3426527 - 342719524763.5
hypothetical proteinC1N32_15455Not AvailableNegative3427395 - 342789818930.3
superoxide dismutaseC1N32_15460Not AvailableNegative3428038 - 342862221494.1
monothiol glutaredoxin, grx4 familyC1N32_15465Not AvailablePositive3429081 - 342941612352.9
dna topoisomerase iiiC1N32_15470Not AvailablePositive3429505 - 343145472817.6

Displaying genes 3101 – 3110 of 4297 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.