Vibrio diazotrophicus strain 60.27F

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio diazotrophicus strain 60.27F is characterized by having a single replicon, indicating a streamlined genomic structure. This strain is associated with the host organism Penaeus vannamei, commonly known as the Pacific white shrimp. The relationship between V. diazotrophicus and P. vannamei suggests potential implications for shrimp aquaculture, particularly in terms of nitrogen fixation capabilities that may benefit the host organism. The strain is documented under the accession number POSK00000000.1, which provides a reference point for genomic studies and further research on its biological functions and interactions. Given its association with a commercially significant aquaculture species, understanding the role of V. diazotrophicus in the shrimp's environment could lead to advancements in sustainable practices and improved health in aquaculture settings. The presence of V. diazotrophicus within the microbiome of Penaeus vannamei may contribute to the host's nutrient acquisition and overall well-being, potentially enhancing growth rates and disease resistance. This relationship underscores the ecological significance of microbial interactions in aquatic systems, highlighting the importance of studying such symbiotic organisms to optimize aquaculture productivity and environmental health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio diazotrophicus
Strainstrain 60.27F

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio diazotrophicus strain 60.27F
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatMarine
Biotic relationshipNot Available
Host(s)Penaeus vannamei
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio diazotrophicus strain 60.27F Contig042, whole genome

Gene Summary

Adenine Count

1318370 bp

Thymine Count

1334571 bp

Guanine Count

1039367 bp

Cytosine Count

999116 bp

Genome Length

4691444 bp

Protein-coding Genes

4163 genes

Non-Coding Genes

134 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
non-canonical purine ntp phosphataseC1N32_11295Not AvailableNegative2539757 - 254028719115.8
diguanylate phosphodiesteraseC1N32_11300Not AvailableNegative2540259 - 254260490037.9
spermidine/putrescine abc transporter substrate-binding proteinC1N32_11305Not AvailableNegative2542588 - 254360738412.1
prephenate dehydrataseC1N32_11310Not AvailableNegative2543809 - 254498444089.0
ribosome-associated translation inhibitor raiaC1N32_11315Not AvailableNegative2545224 - 254555012436.8
lytic transglycosylase fC1N32_11320Not AvailableNegative2545852 - 254732756186.9
outer membrane protein assembly factor bamdC1N32_11325Not AvailableNegative2547451 - 254817927981.2
23s rrna pseudouridine(1911/1915/1917) synthase rludC1N32_11330Not AvailablePositive2548383 - 254935736661.3
peptidoglycan editing factor pgefC1N32_11335Not AvailablePositive2549373 - 255010426623.6
atp-dependent chaperone clpbC1N32_11340Not AvailablePositive2550198 - 255277195790.4

Displaying genes 2281 – 2290 of 4297 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.