Vibrio diazotrophicus strain 60.27F

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio diazotrophicus strain 60.27F is characterized by having a single replicon, indicating a streamlined genomic structure. This strain is associated with the host organism Penaeus vannamei, commonly known as the Pacific white shrimp. The relationship between V. diazotrophicus and P. vannamei suggests potential implications for shrimp aquaculture, particularly in terms of nitrogen fixation capabilities that may benefit the host organism. The strain is documented under the accession number POSK00000000.1, which provides a reference point for genomic studies and further research on its biological functions and interactions. Given its association with a commercially significant aquaculture species, understanding the role of V. diazotrophicus in the shrimp's environment could lead to advancements in sustainable practices and improved health in aquaculture settings. The presence of V. diazotrophicus within the microbiome of Penaeus vannamei may contribute to the host's nutrient acquisition and overall well-being, potentially enhancing growth rates and disease resistance. This relationship underscores the ecological significance of microbial interactions in aquatic systems, highlighting the importance of studying such symbiotic organisms to optimize aquaculture productivity and environmental health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio diazotrophicus
Strainstrain 60.27F

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio diazotrophicus strain 60.27F
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatMarine
Biotic relationshipNot Available
Host(s)Penaeus vannamei
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio diazotrophicus strain 60.27F Contig042, whole genome

Gene Summary

Adenine Count

1318370 bp

Thymine Count

1334571 bp

Guanine Count

1039367 bp

Cytosine Count

999116 bp

Genome Length

4691444 bp

Protein-coding Genes

4163 genes

Non-Coding Genes

134 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphoheptose isomeraseC1N32_09160Not AvailableNegative2049100 - 204969021065.3
yran family proteinC1N32_09165Not AvailableNegative2049694 - 205006514105.9
yran family proteinC1N32_09170Not AvailableNegative2050037 - 205185767984.5
16s rrna (cytidine(1402)-2'-o)-methyltransferaseC1N32_09175Not AvailablePositive2051928 - 205279131684.3
16s rrna (cytosine(1402)-n(4))-methyltransferaseC1N32_09185Not AvailablePositive2053499 - 205444935173.0
cell division protein ftslC1N32_09190Not AvailablePositive2054457 - 205477412025.7
peptidoglycan glycosyltransferase ftsiC1N32_09195Not AvailablePositive2054771 - 205652863661.0
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseC1N32_09200Not AvailablePositive2056549 - 205803353460.7
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseC1N32_09205Not AvailablePositive2058030 - 205939148266.6
phospho-n-acetylmuramoyl-pentapeptide- transferaseC1N32_09210Not AvailablePositive2059388 - 206047039771.7

Displaying genes 1861 – 1870 of 4297 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.