Vibrio diazotrophicus strain 60.6B

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio diazotrophicus strain 60.6B is a notable marine bacterium characterized by its single replicon. It is particularly associated with the host organism Penaeus vannamei, commonly known as the Pacific white shrimp. This association suggests potential ecological interactions between the bacterium and its host, possibly influencing the health and growth of the shrimp. The genetic information for Vibrio diazotrophicus strain 60.6B is available under the accession number POSH00000000.1. This accession provides a resource for further genomic studies that may elucidate the roles and functions of this bacterium in marine ecosystems. Given its association with Penaeus vannamei, V. diazotrophicus could play a role in the microbiome of shrimp, potentially contributing to nitrogen fixation or other beneficial processes. Such interactions may be significant for aquaculture practices, where maintaining a healthy microbial balance is crucial for shrimp health and production efficiency. Understanding the specific traits and behaviors of V. diazotrophicus strain 60.6B could offer insights into enhancing shrimp cultivation and overall marine biodiversity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio diazotrophicus
Strainstrain 60.6B

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio diazotrophicus strain 60.6B
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatMarine
Biotic relationshipNot Available
Host(s)Penaeus vannamei
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio diazotrophicus strain 60.6B Contig037, whole genome shotgun

Gene Summary

Adenine Count

1277057 bp

Thymine Count

1282469 bp

Guanine Count

989148 bp

Cytosine Count

994864 bp

Genome Length

4543538 bp

Protein-coding Genes

3987 genes

Non-Coding Genes

160 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinaseC1M56_19855Not AvailablePositive4350559 - 435105018742.5
undecaprenyl-diphosphataseC1M56_19860Not AvailablePositive4351060 - 435186329266.6
cell division protein ftsbC1M56_19865Not AvailablePositive4351989 - 435227010693.7
2-c-methyl-d-erythritol 4-phosphate cytidylyltransferaseC1M56_19870Not AvailablePositive4352270 - 435296525587.8
2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthaseC1M56_19875Not AvailablePositive4352968 - 435344416766.2
trna pseudouridine(13) synthase trudC1M56_19880Not AvailablePositive4353455 - 435450139184.4
5'/3'-nucleotidase sureC1M56_19885Not AvailablePositive4354494 - 435526127643.7
protein-l-isoaspartate o-methyltransferaseC1M56_19890Not AvailablePositive4355254 - 435588023201.1
hypothetical proteinC1M56_19895Not AvailablePositive4355880 - 435680333069.2
rna polymerase sigma factor rposC1M56_19900Not AvailablePositive4356875 - 435787338138.2

Displaying genes 3961 – 3970 of 4147 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.