Vibrio diazotrophicus strain 60.6B

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio diazotrophicus strain 60.6B is a notable marine bacterium characterized by its single replicon. It is particularly associated with the host organism Penaeus vannamei, commonly known as the Pacific white shrimp. This association suggests potential ecological interactions between the bacterium and its host, possibly influencing the health and growth of the shrimp. The genetic information for Vibrio diazotrophicus strain 60.6B is available under the accession number POSH00000000.1. This accession provides a resource for further genomic studies that may elucidate the roles and functions of this bacterium in marine ecosystems. Given its association with Penaeus vannamei, V. diazotrophicus could play a role in the microbiome of shrimp, potentially contributing to nitrogen fixation or other beneficial processes. Such interactions may be significant for aquaculture practices, where maintaining a healthy microbial balance is crucial for shrimp health and production efficiency. Understanding the specific traits and behaviors of V. diazotrophicus strain 60.6B could offer insights into enhancing shrimp cultivation and overall marine biodiversity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio diazotrophicus
Strainstrain 60.6B

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio diazotrophicus strain 60.6B
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatMarine
Biotic relationshipNot Available
Host(s)Penaeus vannamei
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio diazotrophicus strain 60.6B Contig037, whole genome shotgun

Gene Summary

Adenine Count

1277057 bp

Thymine Count

1282469 bp

Guanine Count

989148 bp

Cytosine Count

994864 bp

Genome Length

4543538 bp

Protein-coding Genes

3987 genes

Non-Coding Genes

160 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinC1M56_20005Not AvailableNegative4378382 - 43786188725.39
iron-hydroxamate abc transporter substrate-binding proteinC1M56_20010Not AvailableNegative4378760 - 437942524679.8
envelope stress response protein pspgC1M56_20015Not AvailableNegative4379511 - 43797207608.12
trna dihydrouridine(20/20a) synthase dusaC1M56_20020Not AvailableNegative4379899 - 438090637533.1
Site-specific integraseC1M56_20025Not AvailablePositive4381014 - 438209341614.4
Portal vertex proteinC1M56_20030Not AvailableNegative4382137 - 438309936949.4
Major capsid proteinC1M56_20035Not AvailableNegative4383124 - 438415238742.8
Hypothetical proteinC1M56_20040Not AvailableNegative4384164 - 43844279834.24
Positive regulator of late gene transcriptionC1M56_20045Not AvailableNegative4384411 - 43845786031.09
Rna-directed dna polymeraseC1M56_20050Not AvailableNegative4384982 - 438682971242.2

Displaying genes 91 – 100 of 4147 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.