Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | strain UMB0744 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
476439 bp
Thymine Count
468567 bp
Guanine Count
551316 bp
Cytosine Count
537929 bp
Genome Length
2036040 bp
Protein-coding Genes
1706 genes
Non-Coding Genes
91 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i-e crispr-associated protein cas6/cse3/case | CJ240_01660 | Not Available | Positive | 395490 - 396299 | 30473.8 |
| type i-e crispr-associated endonuclease cas1 | CJ240_01665 | Not Available | Positive | 396307 - 397263 | 35360.1 |
| type i-e crispr-associated endoribonuclease cas2 | CJ240_01670 | Not Available | Positive | 397260 - 397667 | 15343.6 |
| hypothetical protein | CJ240_01675 | Not Available | Positive | 402772 - 402993 | 8292.76 |
| na+/h+ antiporter subunit g | CJ240_01680 | Not Available | Negative | 403024 - 403485 | 16730.7 |
| cation:proton antiporter | CJ240_01685 | Not Available | Negative | 403409 - 403759 | 12350.3 |
| hypothetical protein | CJ240_01690 | Not Available | Negative | 403765 - 404493 | 26880.9 |
| na+/h+ antiporter subunit d | CJ240_01695 | Not Available | Negative | 404486 - 406198 | 60738.8 |
| na(+)/h(+) antiporter subunit c | CJ240_01700 | Not Available | Negative | 406195 - 406623 | 15342.9 |
| na+/h+ antiporter subunit a | CJ240_01705 | Not Available | Negative | 406620 - 409709 | 110414.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
