Sedimenticola sp.

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Chromatiales

Family

Sedimenticolaceae

Genus

Sedimenticola

Description

Sedimenticola sp. is a distinct bacterial species characterized by possessing a single replicon, which is indicative of a streamlined genomic organization. The genomic sequence of Sedimenticola sp. is represented in the accession number PKUO00000000.1, providing a reference point for further studies and analyses of its genetic makeup. The singular replicon suggests a potential adaptation to specific ecological niches, possibly reflecting a more efficient replication process that could enhance survival in its environment. While specific metabolic pathways and ecological roles are not detailed in the provided data, the presence of a single replicon may imply a focus on essential functions that support its growth and reproduction in sedimentary habitats. Biologically, the streamlined genome of Sedimenticola sp. may allow for flexibility in nutrient utilization and resilience in fluctuating environmental conditions. Such adaptations are crucial for survival in sediment environments, where competition for resources can be intense and conditions can vary significantly. The ecological insight derived from its genomic structure underscores the potential for Sedimenticola sp. to play a role in nutrient cycling within its ecosystem, although further research is necessary to elucidate its specific interactions and contributions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderChromatiales
FamilySedimenticolaceae
GenusSedimenticola
SpeciesSedimenticola sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Sedimenticola sp. isolate BM503 sc_pri, whole genome shotgun

Gene Summary

Adenine Count

892894 bp

Thymine Count

895434 bp

Guanine Count

1079435 bp

Cytosine Count

1066596 bp

Genome Length

3934398 bp

Protein-coding Genes

3652 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp-dependent dna helicase recgC0631_04525Not AvailableNegative932031 - 93411577142.8
tigr04211 family sh3 domain-containing proteinC0631_04530Not AvailablePositive934628 - 93527524660.6
dihydroxy-acid dehydrataseC0631_04535Not AvailableNegative935325 - 93717566170.1
sorbosone dehydrogenaseC0631_04540Not AvailableNegative937244 - 93833540281.7
tetr family transcriptional regulatorC0631_04545Not AvailablePositive938447 - 93902522477.0
acetylornithine deacetylaseC0631_04550Not AvailablePositive939111 - 94025642047.7
hypothetical proteinC0631_04555Not AvailableNegative940271 - 94061212996.9
amino-acid n-acetyltransferaseC0631_04560Not AvailablePositive940840 - 94216849007.6
cation diffusion facilitator family transporterC0631_04565Not AvailablePositive942268 - 94336240265.9
cytochrome bC0631_04570Not AvailablePositive943472 - 94404120710.4

Displaying genes 881 – 890 of 3701 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.