Sedimenticola sp.

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Chromatiales

Family

Sedimenticolaceae

Genus

Sedimenticola

Description

Sedimenticola sp. is a distinct bacterial species characterized by possessing a single replicon, which is indicative of a streamlined genomic organization. The genomic sequence of Sedimenticola sp. is represented in the accession number PKUO00000000.1, providing a reference point for further studies and analyses of its genetic makeup. The singular replicon suggests a potential adaptation to specific ecological niches, possibly reflecting a more efficient replication process that could enhance survival in its environment. While specific metabolic pathways and ecological roles are not detailed in the provided data, the presence of a single replicon may imply a focus on essential functions that support its growth and reproduction in sedimentary habitats. Biologically, the streamlined genome of Sedimenticola sp. may allow for flexibility in nutrient utilization and resilience in fluctuating environmental conditions. Such adaptations are crucial for survival in sediment environments, where competition for resources can be intense and conditions can vary significantly. The ecological insight derived from its genomic structure underscores the potential for Sedimenticola sp. to play a role in nutrient cycling within its ecosystem, although further research is necessary to elucidate its specific interactions and contributions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderChromatiales
FamilySedimenticolaceae
GenusSedimenticola
SpeciesSedimenticola sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Sedimenticola sp. isolate BM503 sc_pri, whole genome shotgun

Gene Summary

Adenine Count

892894 bp

Thymine Count

895434 bp

Guanine Count

1079435 bp

Cytosine Count

1066596 bp

Genome Length

3934398 bp

Protein-coding Genes

3652 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
serine-type d-ala-d-ala carboxypeptidaseC0631_04355Not AvailableNegative900736 - 90188142152.5
septal ring lytic transglycosylase rlpa family lipoproteinC0631_04360Not AvailableNegative902016 - 90285530538.4
lytic murein transglycosylase bC0631_04365Not AvailableNegative902860 - 90373532188.0
rod shape-determining protein rodaC0631_04370Not AvailableNegative903865 - 90500441562.2
penicillin-binding protein 2C0631_04375Not AvailableNegative905001 - 90684268828.6
rod shape-determining protein mredC0631_04380Not AvailableNegative906895 - 90738318539.7
rod shape-determining protein mrecC0631_04385Not AvailableNegative907380 - 90831233701.1
rod shape-determining proteinC0631_04390Not AvailableNegative908399 - 90945137230.0
asp-trna(asn)/glu-trna(gln) amidotransferase gatcab subunit cC0631_04395Not AvailablePositive909699 - 90998610436.3
asp-trna(asn)/glu-trna(gln) amidotransferase gatcab subunit aC0631_04400Not AvailablePositive910043 - 91149751569.0

Displaying genes 851 – 860 of 3701 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.