Sedimenticola sp.

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Chromatiales

Family

Sedimenticolaceae

Genus

Sedimenticola

Description

Sedimenticola sp. is a distinct bacterial species characterized by possessing a single replicon, which is indicative of a streamlined genomic organization. The genomic sequence of Sedimenticola sp. is represented in the accession number PKUO00000000.1, providing a reference point for further studies and analyses of its genetic makeup. The singular replicon suggests a potential adaptation to specific ecological niches, possibly reflecting a more efficient replication process that could enhance survival in its environment. While specific metabolic pathways and ecological roles are not detailed in the provided data, the presence of a single replicon may imply a focus on essential functions that support its growth and reproduction in sedimentary habitats. Biologically, the streamlined genome of Sedimenticola sp. may allow for flexibility in nutrient utilization and resilience in fluctuating environmental conditions. Such adaptations are crucial for survival in sediment environments, where competition for resources can be intense and conditions can vary significantly. The ecological insight derived from its genomic structure underscores the potential for Sedimenticola sp. to play a role in nutrient cycling within its ecosystem, although further research is necessary to elucidate its specific interactions and contributions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderChromatiales
FamilySedimenticolaceae
GenusSedimenticola
SpeciesSedimenticola sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Sedimenticola sp. isolate BM503 sc_pri, whole genome shotgun

Gene Summary

Adenine Count

892894 bp

Thymine Count

895434 bp

Guanine Count

1079435 bp

Cytosine Count

1066596 bp

Genome Length

3934398 bp

Protein-coding Genes

3652 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptidase m23C0631_16865Not AvailablePositive3455781 - 345704047205.5
peptidase s41C0631_16870Not AvailablePositive3457037 - 345834446408.7
hypothetical proteinC0631_16875Not AvailablePositive3458341 - 345921331942.9
dj-1 family proteinC0631_16880Not AvailablePositive3459126 - 345967419340.5
ubiquinone biosynthesis regulatory protein kinase ubibC0631_16885Not AvailableNegative3459680 - 346133562931.9
sterol-binding proteinC0631_16890Not AvailableNegative3461332 - 346196123504.8
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase ubieC0631_16895Not AvailableNegative3461970 - 346271927959.9
ggdef domain-containing proteinC0631_16900Not AvailableNegative3462852 - 3465821112133.0
1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide isomeraseC0631_16905Not AvailableNegative3466018 - 346638313539.7
hslu--hslv peptidase atpase subunitC0631_16910Not AvailableNegative3466455 - 346779249742.4

Displaying genes 3261 – 3270 of 3701 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.