Sedimenticola sp.

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Chromatiales

Family

Sedimenticolaceae

Genus

Sedimenticola

Description

Sedimenticola sp. is a distinct bacterial species characterized by possessing a single replicon, which is indicative of a streamlined genomic organization. The genomic sequence of Sedimenticola sp. is represented in the accession number PKUO00000000.1, providing a reference point for further studies and analyses of its genetic makeup. The singular replicon suggests a potential adaptation to specific ecological niches, possibly reflecting a more efficient replication process that could enhance survival in its environment. While specific metabolic pathways and ecological roles are not detailed in the provided data, the presence of a single replicon may imply a focus on essential functions that support its growth and reproduction in sedimentary habitats. Biologically, the streamlined genome of Sedimenticola sp. may allow for flexibility in nutrient utilization and resilience in fluctuating environmental conditions. Such adaptations are crucial for survival in sediment environments, where competition for resources can be intense and conditions can vary significantly. The ecological insight derived from its genomic structure underscores the potential for Sedimenticola sp. to play a role in nutrient cycling within its ecosystem, although further research is necessary to elucidate its specific interactions and contributions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderChromatiales
FamilySedimenticolaceae
GenusSedimenticola
SpeciesSedimenticola sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Sedimenticola sp. isolate BM503 sc_pri, whole genome shotgun

Gene Summary

Adenine Count

892894 bp

Thymine Count

895434 bp

Guanine Count

1079435 bp

Cytosine Count

1066596 bp

Genome Length

3934398 bp

Protein-coding Genes

3652 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-isopropylmalate dehydratase small subunitC0631_13545Not AvailableNegative2767415 - 276805624224.8
3-isopropylmalate dehydratase large subunitC0631_13550Not AvailableNegative2768056 - 276945950281.1
lysr family transcriptional regulatorC0631_13555Not AvailablePositive2769590 - 277045931956.1
mfs transporterC0631_13560Not AvailableNegative2770443 - 277157941642.8
chorismate synthaseC0631_13565Not AvailableNegative2771619 - 277271939445.9
type i secretion protein tolcC0631_13570Not AvailableNegative2772797 - 277409847662.7
abc transporter atp-binding proteinC0631_13580Not AvailablePositive2775335 - 277708064908.5
hydrolaseC0631_13585Not AvailablePositive2777088 - 277807137102.6
type iii effectorC0631_13595Not AvailablePositive2780033 - 278037112517.6
polyribonucleotide nucleotidyltransferaseC0631_13600Not AvailableNegative2780454 - 278254775468.0

Displaying genes 2621 – 2630 of 3701 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.