Sedimenticola sp.

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Chromatiales

Family

Sedimenticolaceae

Genus

Sedimenticola

Description

Sedimenticola sp. is a distinct bacterial species characterized by possessing a single replicon, which is indicative of a streamlined genomic organization. The genomic sequence of Sedimenticola sp. is represented in the accession number PKUO00000000.1, providing a reference point for further studies and analyses of its genetic makeup. The singular replicon suggests a potential adaptation to specific ecological niches, possibly reflecting a more efficient replication process that could enhance survival in its environment. While specific metabolic pathways and ecological roles are not detailed in the provided data, the presence of a single replicon may imply a focus on essential functions that support its growth and reproduction in sedimentary habitats. Biologically, the streamlined genome of Sedimenticola sp. may allow for flexibility in nutrient utilization and resilience in fluctuating environmental conditions. Such adaptations are crucial for survival in sediment environments, where competition for resources can be intense and conditions can vary significantly. The ecological insight derived from its genomic structure underscores the potential for Sedimenticola sp. to play a role in nutrient cycling within its ecosystem, although further research is necessary to elucidate its specific interactions and contributions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderChromatiales
FamilySedimenticolaceae
GenusSedimenticola
SpeciesSedimenticola sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Sedimenticola sp. isolate BM503 sc_pri, whole genome shotgun

Gene Summary

Adenine Count

892894 bp

Thymine Count

895434 bp

Guanine Count

1079435 bp

Cytosine Count

1066596 bp

Genome Length

3934398 bp

Protein-coding Genes

3652 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sodium:phosphate symporterC0631_09170Not AvailableNegative1877307 - 187911565965.0
metallophosphoesteraseC0631_09175Not AvailableNegative1879261 - 188073055979.2
serine/threonine protein phosphataseC0631_09180Not AvailableNegative1880734 - 188134523618.8
phosphate permeaseC0631_09185Not AvailableNegative1881444 - 18816065316.82
anhydro-n-acetylmuramic acid kinaseC0631_09190Not AvailablePositive1881607 - 188234526197.4
iron-sulfur cluster insertion protein erpaC0631_09195Not AvailableNegative1882353 - 188270612443.5
cell shape determination protein ccmaC0631_09200Not AvailableNegative1882806 - 188328517034.1
hypothetical proteinC0631_09205Not AvailableNegative1883295 - 188402927771.4
n-acetyl-gamma-glutamyl-phosphate reductaseC0631_09210Not AvailableNegative1884048 - 188507636847.5
duf4126 domain-containing proteinC0631_09215Not AvailablePositive1885486 - 188619024966.3

Displaying genes 1781 – 1790 of 3701 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.