Kineobactrum sediminis strain F02

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Cellvibrionales

Family

Halieaceae

Genus

Kineobactrum

Description

Kineobactrum sediminis strain F02 is characterized by a single replicon, indicating a streamlined genomic structure. This strain is cataloged under the accession number PKLZ00000000.1, which serves as a unique identifier for its genomic sequence in biological databases. The presence of a single replicon may suggest that Kineobactrum sediminis strain F02 possesses a simplified genetic architecture, which can have implications for genetic stability and adaptability. This characteristic can be advantageous in various ecological niches, allowing the strain to potentially thrive in specific environments with reduced genomic complexity. In terms of biological significance, the unique traits of Kineobactrum sediminis strain F02 may contribute to its ecological role, possibly influencing nutrient cycling or microbial interactions within its habitat. Its evolutionary adaptations, reflected in its genomic structure, can provide insights into how this strain interacts with other microorganisms and responds to environmental pressures. Overall, the genomic features of Kineobactrum sediminis strain F02, particularly its single replicon, highlight its potential ecological versatility and adaptability, making it a subject of interest for further microbiological studies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderCellvibrionales
FamilyHalieaceae
GenusKineobactrum
SpeciesKineobactrum sediminis
Strainstrain F02

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Kineobactrum sediminis strain F02 contig39, whole genome shotgun

Gene Summary

Adenine Count

845795 bp

Thymine Count

842808 bp

Guanine Count

1183841 bp

Cytosine Count

1188536 bp

Genome Length

4060980 bp

Protein-coding Genes

3537 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phenylacetate-coa oxygenase subunit paajCWI75_11465Not AvailableNegative2564317 - 256485019365.0
phenylacetate-coa oxygenase subunit paaiCWI75_11470Not AvailableNegative2564861 - 256562828774.8
1,2-phenylacetyl-coa epoxidase subunit bCWI75_11475Not AvailableNegative2565639 - 256592310853.6
1,2-phenylacetyl-coa epoxidase subunit aCWI75_11480Not AvailableNegative2565935 - 256690336779.4
3-oxoadipyl-coa thiolaseCWI75_11485Not AvailableNegative2566929 - 256813141573.8
2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-coa isomeraseCWI75_11490Not AvailableNegative2568135 - 256892627943.5
phenylacetic acid degradation bifunctional protein paazCWI75_11495Not AvailableNegative2568959 - 257099872757.1
3-hydroxyacyl-coa dehydrogenaseCWI75_11500Not AvailablePositive2571166 - 257326574923.1
phenylacetate--coa ligaseCWI75_11505Not AvailableNegative2573270 - 257456847735.3
phenylacetic acid degradation operon negative regulatory protein paaxCWI75_11510Not AvailablePositive2574772 - 257570134746.6

Displaying genes 2271 – 2280 of 3591 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4 records
Metabolite IDMetabolite nameStructureCAS number
BASm00006473-hydroxypropanoateC3H5O3Chemical structure of 3-hydroxypropanoateNot available
Average89.071Da
Monoisotopic89.0244176Da
BASm00027107,8-dihydrofolateC19H19N7O6Chemical structure of 7,8-dihydrofolateNot available
Average441.405Da
Monoisotopic441.1407785Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003701L-methionine (S)-S-oxideC5H11NO3SChemical structure of L-methionine (S)-S-oxide62697-73-8
Average165.21Da
Monoisotopic165.045964392Da

Displaying 1–4 of 4 metabolites

Health Effects

No health effects information available for this bacterium.