Hydrogenovibrio sp. SC-1

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Thiotrichales

Family

Piscirickettsiaceae

Genus

Hydrogenovibrio

Description

Hydrogenovibrio sp. SC-1 is a Gram-negative, rod-shaped bacterium characterized by its unique metabolic capabilities. This organism possesses a single replicon, indicating a streamlined genetic architecture that may contribute to its adaptability in various environments. The accession number for Hydrogenovibrio sp. SC-1 is PKGB00000000.1, which is part of the genomic repository that facilitates further research and understanding of its biological functions. The classification of Hydrogenovibrio sp. SC-1 as Gram-negative suggests that it has a thinner peptidoglycan layer and an outer membrane, which can influence its interactions with the environment and other microorganisms. This structural characteristic often plays a significant role in the bacterium's resistance to certain antibiotics and its ability to thrive in diverse conditions. Hydrogenovibrio species are known to be involved in biogeochemical cycles, particularly in hydrogen metabolism, which can have implications for energy production and carbon cycling in their habitats. The ecology of Hydrogenovibrio sp. SC-1 may reflect its potential role in environments rich in hydrogen, such as hydrothermal vents or anaerobic sediments, where it could contribute to the overall microbial community dynamics. In summary, Hydrogenovibrio sp. SC-1 is a Gram-negative, rod-shaped bacterium with a single replicon. Its metabolic capabilities may play an important role in the carbon and energy cycles of its ecological niche, underscoring the significance of such microorganisms in biogeochemical processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderThiotrichales
FamilyPiscirickettsiaceae
GenusHydrogenovibrio
SpeciesHydrogenovibrio sp. SC-1
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hydrogenovibrio sp. SC-1 Ga0079983_141, whole genome shotgun

Gene Summary

Adenine Count

689410 bp

Thymine Count

711397 bp

Guanine Count

557808 bp

Cytosine Count

493458 bp

Genome Length

2452073 bp

Protein-coding Genes

2231 genes

Non-Coding Genes

40 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
short-chain dehydrogenaseCYQ88_10040Not AvailableNegative2152987 - 215369726097.2
haloacid dehalogenaseCYQ88_10045Not AvailableNegative2153694 - 215435324530.3
bifunctional 3-demethylubiquinol 3-o-methyltransferase/2-polyprenyl-6-hydroxyphenol methylaseCYQ88_10050Not AvailableNegative2154389 - 215514427515.7
dna gyrase subunit aCYQ88_10055Not AvailablePositive2155291 - 215789796718.2
3-phosphoserine/phosphohydroxythreonine transaminaseCYQ88_10060Not AvailablePositive2157919 - 215898339619.2
prephenate dehydrataseCYQ88_10065Not AvailablePositive2159024 - 216012440132.1
histidinol-phosphate transaminaseCYQ88_10070Not AvailablePositive2160148 - 216125140682.4
prephenate dehydrogenase/arogenate dehydrogenase family proteinCYQ88_10075Not AvailablePositive2161248 - 216212331393.7
3-phosphoshikimate 1-carboxyvinyltransferaseCYQ88_10080Not AvailablePositive2162162 - 216351147153.0
(d)cmp kinaseCYQ88_10085Not AvailablePositive2163520 - 216418824355.3

Displaying genes 2001 – 2010 of 2271 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.