Psychromonas sp. Urea-02u-13

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Psychromonadaceae

Genus

Psychromonas

Description

Psychromonas sp. Urea-02u-13 is a notable bacterium characterized by its single replicon structure, indicating a streamlined genomic organization that may contribute to its adaptability in various environments. The genomic data for this organism is available under the accession number PJBZ00000000.1, which allows for further exploration and analysis of its genetic makeup. Psychromonas species are generally psychrophilic, thriving in cold environments, which suggests that Psychromonas sp. Urea-02u-13 may possess unique adaptations that enable it to maintain cellular functions at low temperatures. This ability to survive and grow in such harsh conditions may play a significant role in biogeochemical cycles, particularly in polar and deep-sea ecosystems where these bacteria are often found. The ecological implications of Psychromonas sp. Urea-02u-13 include its potential contribution to nutrient cycling in cold marine environments. Its metabolic pathways may facilitate the breakdown of organic matter, thereby influencing the availability of nutrients for other organisms in these ecosystems. Understanding the specific traits and functions of Psychromonas sp. Urea-02u-13 can enhance our comprehension of microbial diversity and ecosystem dynamics in cold habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyPsychromonadaceae
GenusPsychromonas
SpeciesPsychromonas sp. Urea-02u-13
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Psychromonas sp. Urea-02u-13 contig287, whole genome shotgun

Gene Summary

Adenine Count

1448613 bp

Thymine Count

1449009 bp

Guanine Count

930159 bp

Cytosine Count

921483 bp

Genome Length

4749264 bp

Protein-coding Genes

4160 genes

Non-Coding Genes

83 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinCXF74_03880Not AvailablePositive861402 - 8616208498.41
lysine transporter lyseCXF74_03885Not AvailablePositive861622 - 86223022108.8
dna polymerase iiCXF74_03890Not AvailableNegative862284 - 86467790032.0
long-chain fatty acid--coa ligaseCXF74_03895Not AvailablePositive864808 - 86656565932.3
acetyl-coa c-acyltransferaseCXF74_03900Not AvailablePositive866718 - 86800745641.4
fatty-acid oxidation protein subunit alphaCXF74_03905Not AvailablePositive868170 - 87034179908.9
dna polymerase iiCXF74_03910Not AvailablePositive870338 - 87225170807.9
transcriptional regulatorCXF74_03915Not AvailablePositive872549 - 8728039604.28
3-isopropylmalate dehydrogenaseCXF74_03920Not AvailableNegative872975 - 87407840207.7
serine/threonine protein kinaseCXF74_03925Not AvailableNegative874382 - 87613965672.8

Displaying genes 761 – 770 of 4243 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

42 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001362octadecanoateC18H35O2Chemical structure of octadecanoateNot available
Average283.4693Da
Monoisotopic283.263705364Da
BASm0001429decanoateC10H19O2Chemical structure of decanoateNot available
Average171.2567Da
Monoisotopic171.138504852Da
BASm0001774tetradecanoateC14H27O2Chemical structure of tetradecanoateNot available
Average227.363Da
Monoisotopic227.2011051Da
BASm0001775(9Z)-octadecenoateC18H33O2Chemical structure of (9Z)-octadecenoateNot available
Average281.4534Da
Monoisotopic281.2480553Da
BASm0001795pentanoateC5H9O2Chemical structure of pentanoateNot available
Average101.126Da
Monoisotopic101.0608031Da

Displaying 1–10 of 42 metabolites

Health Effects

No health effects information available for this bacterium.