Pseudomonas sp. Choline-3u-10

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. Choline-3u-10 is characterized by having a single replicon, which indicates a streamlined genomic organization. The genome of this strain is documented under the accession number PJBG00000000.1. This accession provides a reference point for researchers interested in studying the genetic and phenotypic traits of this particular Pseudomonas species. Pseudomonas species are known for their metabolic versatility and ability to thrive in various environments, including soil and aquatic ecosystems. This versatility often allows them to play significant roles in biogeochemical cycles and to contribute to nutrient cycling in their habitats. While specific metabolic pathways or ecological roles for Pseudomonas sp. Choline-3u-10 are not detailed, Pseudomonas species are generally associated with the degradation of organic pollutants, indicating a potential ecological function in bioremediation. Understanding the genetic makeup of Pseudomonas sp. Choline-3u-10 through its single replicon may provide insights into its adaptability and ecological roles. The study of such strains can help elucidate the mechanisms by which Pseudomonas species interact with their environments and contribute to ecosystem health. The documented genomic information could serve as a basis for future research aimed at exploring the specific functions and applications of this strain in microbial ecology and biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. Choline-3u-10
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. Choline-3u-10
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. Choline-3u-10 contig7, whole genome shotgun

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
methyl-accepting chemotaxis proteinCXF92_20610Not AvailableNegative4420104 - 442206870458.0
diguanylate cyclase response regulatorCXF92_20615Not AvailableNegative4422116 - 442372960923.5
duf2333 domain-containing proteinCXF92_20620Not AvailablePositive4423947 - 442500239163.4
sigma-54-dependent fis family transcriptional regulatorCXF92_20625Not AvailableNegative4425042 - 442638249946.6
pas domain-containing sensor histidine kinaseCXF92_20630Not AvailableNegative4426490 - 442808259141.9
hypothetical proteinCXF92_20635Not AvailableNegative4428072 - 44283058866.82
outer membrane protein assembly factor bamdCXF92_20640Not AvailableNegative4428366 - 442937338105.4
23s rrna pseudouridine(1911/1915/1917) synthase rludCXF92_20645Not AvailablePositive4429664 - 443063836013.5
peptidoglycan editing factor pgefCXF92_20650Not AvailablePositive4430635 - 443136926169.3
atp-dependent chaperone clpbCXF92_20655Not AvailablePositive4431550 - 443411495285.4

Displaying genes 4061 – 4070 of 4580 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.