Pseudomonas sp. Choline-3u-10

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. Choline-3u-10 is characterized by having a single replicon, which indicates a streamlined genomic organization. The genome of this strain is documented under the accession number PJBG00000000.1. This accession provides a reference point for researchers interested in studying the genetic and phenotypic traits of this particular Pseudomonas species. Pseudomonas species are known for their metabolic versatility and ability to thrive in various environments, including soil and aquatic ecosystems. This versatility often allows them to play significant roles in biogeochemical cycles and to contribute to nutrient cycling in their habitats. While specific metabolic pathways or ecological roles for Pseudomonas sp. Choline-3u-10 are not detailed, Pseudomonas species are generally associated with the degradation of organic pollutants, indicating a potential ecological function in bioremediation. Understanding the genetic makeup of Pseudomonas sp. Choline-3u-10 through its single replicon may provide insights into its adaptability and ecological roles. The study of such strains can help elucidate the mechanisms by which Pseudomonas species interact with their environments and contribute to ecosystem health. The documented genomic information could serve as a basis for future research aimed at exploring the specific functions and applications of this strain in microbial ecology and biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. Choline-3u-10
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. Choline-3u-10
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. Choline-3u-10 contig7, whole genome shotgun

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rod shape-determining protein rodaCXF92_08465Not AvailablePositive1849151 - 185029641550.5
lytic murein transglycosylase bCXF92_08470Not AvailablePositive1850335 - 185132736728.4
septal ring lytic transglycosylase rlpa family proteinCXF92_08475Not AvailablePositive1851324 - 185230735058.4
d-alanyl-d-alanine carboxypeptidaseCXF92_08480Not AvailablePositive1852383 - 185354042405.7
hypothetical proteinCXF92_08485Not AvailablePositive1853601 - 185388510511.6
lipoyl(octanoyl) transferase lipbCXF92_08490Not AvailablePositive1853947 - 185460323919.1
lipoyl synthaseCXF92_08495Not AvailableNegative1854696 - 185574838913.5
lytic murein transglycosylaseCXF92_08500Not AvailableNegative1856026 - 185732747064.4
ribosome alternative rescue factor arfaCXF92_08505Not AvailableNegative1857388 - 18575465930.12
dna polymerase iii subunit deltaCXF92_08510Not AvailableNegative1857700 - 185872837533.3

Displaying genes 1821 – 1830 of 4580 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.