Pseudomonas sp. Choline-02u-1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. Choline-02u-1 is a bacterial strain characterized by its single replicon, which is significant for its genomic stability and replication efficiency. The strain is cataloged under the accession number PJBC00000000.1, indicating its registration in a biological database, which allows for further research and reference in microbial studies. Pseudomonas species are widely recognized for their metabolic versatility and ability to thrive in various environments, including soil and water. They are often studied for their potential in bioremediation, as they can degrade a range of organic pollutants. The specific traits of Pseudomonas sp. Choline-02u-1, while not detailed in this context, suggest that it may possess unique metabolic pathways that could be beneficial in ecological applications, particularly in environments where choline and other related compounds are prevalent. The presence of a single replicon in Pseudomonas sp. Choline-02u-1 may also indicate a streamlined genetic organization, which can be advantageous for adaptive responses to environmental changes. This characteristic could enhance its survival and functional capabilities in diverse ecological niches, contributing to nutrient cycling and ecosystem health. In summary, Pseudomonas sp. Choline-02u-1's single replicon and its classification provide a foundation for understanding its potential roles in biodegradation and ecological interactions, highlighting the importance of microbial diversity in maintaining environmental balance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. Choline-02u-1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. Choline-02u-1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. Choline-02u-1 contig6, whole genome shotgun

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4761 genes

Non-Coding Genes

649 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
23s rrna (adenine(2030)-n(6))-methyltransferase rlmjCXF97_04300Not AvailableNegative913661 - 91450031783.4
hypothetical proteinCXF97_04305Not AvailablePositive914695 - 91511115775.8
hypothetical proteinCXF97_04310Not AvailableNegative915211 - 91553111764.5
hypothetical proteinCXF97_04315Not AvailableNegative915858 - 91657126411.4
type vi secretion system tip protein vgrgCXF97_04320Not AvailableNegative916561 - 91857674569.8
sodium/proline symporter putpCXF97_04325Not AvailableNegative918924 - 92040852917.5
trifunctional transcriptional regulator/proline dehydrogenase/l-glutamate gamma-semialdehyde dehydrogenaseCXF97_04330Not AvailablePositive920867 - 924820142670.0
acyl-coa dehydrogenaseCXF97_04335Not AvailablePositive925042 - 92684466160.9
chemotaxis proteinCXF97_04340Not AvailableNegative926935 - 92887269408.9
cell division protein zapaCXF97_04345Not AvailableNegative928972 - 92927411065.4

Displaying genes 981 – 990 of 5410 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.