Pseudidiomarina sediminum strain c121

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Idiomarinaceae

Genus

Pseudidiomarina

Description

Pseudidiomarina sediminum strain c121 is characterized by a single replicon, indicating a streamlined genomic structure. The strain is cataloged under the accession number PIQE00000000.1, which provides a reference for its genomic data. This marine bacterium is part of the Pseudidiomarina genus, known for its ecological roles in marine environments. The single replicon trait suggests that Pseudidiomarina sediminum strain c121 may have evolved to efficiently manage its genetic material, potentially allowing for rapid adaptation to varying conditions in its sedimentary habitat. The presence of a single replicon can also imply a reduced metabolic burden, which may enhance the organism's ability to thrive in specific ecological niches. This trait is particularly relevant in environments where nutrient availability can fluctuate, as a more streamlined genetic framework could facilitate quicker responses to changing conditions. Overall, the genomic simplicity of Pseudidiomarina sediminum strain c121 might confer ecological advantages in its marine sediment habitat, emphasizing the importance of genetic organization in microbial adaptability and survival.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyIdiomarinaceae
GenusPseudidiomarina
SpeciesPseudidiomarina sediminum
Strainstrain c121

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudidiomarina sediminum strain c121 contig7, whole genome

Gene Summary

Adenine Count

656006 bp

Thymine Count

645757 bp

Guanine Count

646891 bp

Cytosine Count

674106 bp

Genome Length

2622760 bp

Protein-coding Genes

2389 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
histidine--trna ligaseCWI80_04400Not AvailableNegative902679 - 90394147243.0
flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthaseCWI80_04405Not AvailableNegative903997 - 90510940241.7
duf4115 domain-containing proteinCWI80_04410Not AvailableNegative905128 - 90617437617.4
type iv pilus biogenesis/stability protein pilwCWI80_04415Not AvailableNegative906186 - 90697429509.8
bifunctional trna (adenosine(37)-c2)-methyltransferase trmg/ribosomal rna large subunit methyltransferase rlmnCWI80_04420Not AvailableNegative907045 - 90817842142.9
nucleoside-diphosphate kinaseCWI80_04425Not AvailableNegative908331 - 90876215665.5
peptide-methionine (s)-s-oxide reductaseCWI80_04430Not AvailablePositive908927 - 90945719905.4
acyloxyacyl hydrolaseCWI80_04435Not AvailablePositive909689 - 91011716247.0
isc system 2fe-2s type ferredoxinCWI80_04440Not AvailableNegative910119 - 91045712359.6
fe-s protein assembly chaperone hscaCWI80_04445Not AvailableNegative910515 - 91239866705.4

Displaying genes 881 – 890 of 2446 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.