Pseudidiomarina sediminum strain c121

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Idiomarinaceae

Genus

Pseudidiomarina

Description

Pseudidiomarina sediminum strain c121 is characterized by a single replicon, indicating a streamlined genomic structure. The strain is cataloged under the accession number PIQE00000000.1, which provides a reference for its genomic data. This marine bacterium is part of the Pseudidiomarina genus, known for its ecological roles in marine environments. The single replicon trait suggests that Pseudidiomarina sediminum strain c121 may have evolved to efficiently manage its genetic material, potentially allowing for rapid adaptation to varying conditions in its sedimentary habitat. The presence of a single replicon can also imply a reduced metabolic burden, which may enhance the organism's ability to thrive in specific ecological niches. This trait is particularly relevant in environments where nutrient availability can fluctuate, as a more streamlined genetic framework could facilitate quicker responses to changing conditions. Overall, the genomic simplicity of Pseudidiomarina sediminum strain c121 might confer ecological advantages in its marine sediment habitat, emphasizing the importance of genetic organization in microbial adaptability and survival.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyIdiomarinaceae
GenusPseudidiomarina
SpeciesPseudidiomarina sediminum
Strainstrain c121

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudidiomarina sediminum strain c121 contig7, whole genome

Gene Summary

Adenine Count

656006 bp

Thymine Count

645757 bp

Guanine Count

646891 bp

Cytosine Count

674106 bp

Genome Length

2622760 bp

Protein-coding Genes

2389 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf502 domain-containing proteinCWI80_06510Not AvailablePositive1358169 - 135877722324.0
carboxylesteraseCWI80_06515Not AvailablePositive1358778 - 135943423575.2
atp-grasp domain-containing proteinCWI80_06520Not AvailableNegative1359417 - 136050239840.7
5-(carboxyamino)imidazole ribonucleotide mutaseCWI80_06525Not AvailableNegative1360499 - 136099317003.9
ggdef domain-containing proteinCWI80_06530Not AvailableNegative1361053 - 136207837948.8
ggdef domain-containing proteinCWI80_06535Not AvailableNegative1362137 - 136318338701.8
hydrolaseCWI80_06540Not AvailablePositive1363298 - 136384620575.8
cold-shock proteinCWI80_06545Not AvailablePositive1364047 - 13642537308.67
serine o-acetyltransferaseCWI80_06550Not AvailableNegative1364305 - 136511129939.7
amidohydrolase family proteinCWI80_06555Not AvailablePositive1365276 - 136658346111.0

Displaying genes 1301 – 1310 of 2446 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.