Pseudidiomarina sediminum strain c121

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Idiomarinaceae

Genus

Pseudidiomarina

Description

Pseudidiomarina sediminum strain c121 is characterized by a single replicon, indicating a streamlined genomic structure. The strain is cataloged under the accession number PIQE00000000.1, which provides a reference for its genomic data. This marine bacterium is part of the Pseudidiomarina genus, known for its ecological roles in marine environments. The single replicon trait suggests that Pseudidiomarina sediminum strain c121 may have evolved to efficiently manage its genetic material, potentially allowing for rapid adaptation to varying conditions in its sedimentary habitat. The presence of a single replicon can also imply a reduced metabolic burden, which may enhance the organism's ability to thrive in specific ecological niches. This trait is particularly relevant in environments where nutrient availability can fluctuate, as a more streamlined genetic framework could facilitate quicker responses to changing conditions. Overall, the genomic simplicity of Pseudidiomarina sediminum strain c121 might confer ecological advantages in its marine sediment habitat, emphasizing the importance of genetic organization in microbial adaptability and survival.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyIdiomarinaceae
GenusPseudidiomarina
SpeciesPseudidiomarina sediminum
Strainstrain c121

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudidiomarina sediminum strain c121 contig7, whole genome

Gene Summary

Adenine Count

656006 bp

Thymine Count

645757 bp

Guanine Count

646891 bp

Cytosine Count

674106 bp

Genome Length

2622760 bp

Protein-coding Genes

2389 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pimeloyl-[acyl-carrier protein] methyl ester esteraseCWI80_05760Not AvailablePositive1187844 - 118862928585.6
bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyaseCWI80_05765Not AvailableNegative1188626 - 118944130195.9
proline hydroxylaseCWI80_05770Not AvailablePositive1189513 - 119016925105.7
50s ribosomal protein l33CWI80_05775Not AvailableNegative1190226 - 11903816117.63
50s ribosomal protein l28CWI80_05780Not AvailableNegative1190393 - 11906299059.06
jab domain-containing proteinCWI80_05785Not AvailableNegative1190790 - 119146724969.6
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase coabcCWI80_05790Not AvailablePositive1191635 - 119286743559.7
nucleoid occlusion factor slmaCWI80_05795Not AvailablePositive1192921 - 119350522240.0
nad(p)h-dependent glycerol-3-phosphate dehydrogenaseCWI80_05800Not AvailableNegative1193497 - 119449835845.1
protein-export chaperone secbCWI80_05805Not AvailableNegative1194521 - 119502118591.7

Displaying genes 1151 – 1160 of 2446 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.