Bifidobacterium scaligerum strain TRE D

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Bifidobacteriales

Family

Bifidobacteriaceae

Genus

Bifidobacterium

Description

Bifidobacterium scaligerum strain TRE D is a rod-shaped bacterium characterized by the presence of flagella, which may contribute to its motility and ecological adaptability. This strain has been documented with a single replicon, indicating a streamlined genetic organization that can be beneficial for efficient replication and resource utilization in its environmental niche. The genomic data for Bifidobacterium scaligerum strain TRE D is accessible under the accession number PGLQ00000000.1. This information can facilitate further research into its genetic composition and potential applications in microbiology. The presence of flagella is particularly noteworthy, as it suggests that Bifidobacterium scaligerum strain TRE D may have enhanced capabilities for movement within its habitat, potentially allowing it to colonize specific niches or escape unfavorable conditions. The rod shape of the bacterium is also a common feature among many members of the Bifidobacterium genus, which is often associated with beneficial roles in the gut microbiota of various hosts. Overall, the traits of Bifidobacterium scaligerum strain TRE D highlight its potential ecological roles in microbial communities, particularly in the gastrointestinal tract where motility may influence its interactions with other microorganisms and the host. Understanding these characteristics can provide insights into the functional dynamics of this bacterium in its natural environment, as well as its implications for health and disease.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderBifidobacteriales
FamilyBifidobacteriaceae
GenusBifidobacterium
SpeciesBifidobacterium scaligerum
Strainstrain TRE D

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bifidobacterium scaligerum strain TRE D


Gene Summary

Adenine Count

554651 bp

Thymine Count

551962 bp

Guanine Count

770391 bp

Cytosine Count

775084 bp

Genome Length

2652159 bp

Protein-coding Genes

1961 genes

Non-Coding Genes

98 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
5s ribosomal rnaNot AvailableNot AvailablePositive2944 - 3060Not Available
histidinol dehydrogenaseCUU80_00020Not AvailablePositive3185 - 456748802.0
histidinol-phosphate transaminaseCUU80_00025Not AvailablePositive4692 - 586442937.0
imidazoleglycerol-phosphate dehydratase hisbCUU80_00030Not AvailablePositive6035 - 663721833.2
hypothetical proteinCUU80_00035Not AvailablePositive6637 - 742827196.0
imidazole glycerol phosphate synthase subunit hishCUU80_00040Not AvailablePositive7595 - 824223091.1
bifunctional 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide isomerase/phosphoribosylanthranilate isomerase priaCUU80_00045Not AvailablePositive8352 - 907725762.4
duf2252 domain-containing proteinCUU80_00050Not AvailableNegative9326 - 1076554062.1
type i glutamate--ammonia ligaseCUU80_00055Not AvailablePositive10956 - 1229350055.1
mfs transporterCUU80_00060Not AvailablePositive12542 - 1378044737.5

Displaying genes 61 – 70 of 2059 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.