Bifidobacterium scaligerum strain TRE D

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Bifidobacteriales

Family

Bifidobacteriaceae

Genus

Bifidobacterium

Description

Bifidobacterium scaligerum strain TRE D is a rod-shaped bacterium characterized by the presence of flagella, which may contribute to its motility and ecological adaptability. This strain has been documented with a single replicon, indicating a streamlined genetic organization that can be beneficial for efficient replication and resource utilization in its environmental niche. The genomic data for Bifidobacterium scaligerum strain TRE D is accessible under the accession number PGLQ00000000.1. This information can facilitate further research into its genetic composition and potential applications in microbiology. The presence of flagella is particularly noteworthy, as it suggests that Bifidobacterium scaligerum strain TRE D may have enhanced capabilities for movement within its habitat, potentially allowing it to colonize specific niches or escape unfavorable conditions. The rod shape of the bacterium is also a common feature among many members of the Bifidobacterium genus, which is often associated with beneficial roles in the gut microbiota of various hosts. Overall, the traits of Bifidobacterium scaligerum strain TRE D highlight its potential ecological roles in microbial communities, particularly in the gastrointestinal tract where motility may influence its interactions with other microorganisms and the host. Understanding these characteristics can provide insights into the functional dynamics of this bacterium in its natural environment, as well as its implications for health and disease.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderBifidobacteriales
FamilyBifidobacteriaceae
GenusBifidobacterium
SpeciesBifidobacterium scaligerum
Strainstrain TRE D

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bifidobacterium scaligerum strain TRE D

Gene Summary

Adenine Count

554651 bp

Thymine Count

551962 bp

Guanine Count

770391 bp

Cytosine Count

775084 bp

Genome Length

2652159 bp

Protein-coding Genes

1961 genes

Non-Coding Genes

98 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
polar amino acid abc transporter permeaseCUU80_07305Not AvailableNegative1723719 - 172437824187.4
phospholipaseCUU80_07310Not AvailablePositive1724705 - 172535523588.0
flavodoxinCUU80_07315Not AvailableNegative1725622 - 172616119706.3
short-chain dehydrogenaseCUU80_07320Not AvailableNegative1726231 - 172706429431.5
lysr family transcriptional regulatorCUU80_07325Not AvailablePositive1727225 - 172810332465.2
mfs transporterCUU80_07330Not AvailableNegative1728108 - 172947548134.4
phosphoenolpyruvate--protein phosphotransferaseCUU80_07335Not AvailableNegative1729889 - 173151459379.7
hpr family phosphocarrier proteinCUU80_07340Not AvailableNegative1731514 - 17317749342.08
6-phospho-beta-glucosidaseCUU80_07345Not AvailableNegative1731794 - 173323954601.1
pts lactose/cellobiose transporter subunit iiaCUU80_07350Not AvailableNegative1733272 - 173359811981.2

Displaying genes 1421 – 1430 of 2059 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.