Phyllobacterium brassicacearum strain STM 196

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Phyllobacteriaceae

Genus

Phyllobacterium

Description

Phyllobacterium brassicacearum strain STM 196 is a Gram-negative, rod-shaped bacterium that resides in the rhizosphere, the region of soil adjacent to plant roots. This strain is characterized by having a single replicon, indicating a streamlined genomic structure. Notably, it has been documented to associate with several plant hosts, including Triticum aestivum (common wheat), Hordeum vulgare (barley), and Lathyrus oleraceus (grass pea). The association of P. brassicacearum STM 196 with these important agricultural crops highlights its potential role in plant-microbe interactions, particularly in the rhizosphere environment. Microbial communities in the rhizosphere are crucial for nutrient cycling, soil health, and plant growth promotion. Given its specific habitat and host associations, this strain may contribute to beneficial plant-microbe relationships, which can enhance the growth and resilience of these crops. The presence of P. brassicacearum STM 196 in the rhizosphere could suggest its involvement in processes such as nitrogen fixation, biocontrol of plant pathogens, or promotion of plant health. The strain's documented accession number is PGGO00000000.1, which provides a reference for further genomic studies that could explore its metabolic capabilities and ecological functions. Understanding the role of this bacterium within its ecological niche could inform agricultural practices aimed at improving crop yield and sustainability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyPhyllobacteriaceae
GenusPhyllobacterium
SpeciesPhyllobacterium brassicacearum
Strainstrain STM 196

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere
Biotic relationshipNot Available
Host(s)Triticum aestivum, Hordeum vulgare, Lathyrus oleraceus
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phyllobacterium brassicacearum strain STM 196

Gene Summary

Adenine Count

1238344 bp

Thymine Count

1234580 bp

Guanine Count

1656732 bp

Cytosine Count

1664338 bp

Genome Length

5793994 bp

Protein-coding Genes

5522 genes

Non-Coding Genes

95 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cbb3-type cytochrome oxidase assembly protein ccosCU102_26175Not AvailableNegative5197718 - 51978826202.36
nitrogen fixation protein fixiCU102_26180Not AvailableNegative5197879 - 520014080388.4
hypothetical proteinCU102_26185Not AvailableNegative5200145 - 520093328494.0
hypothetical proteinCU102_26190Not AvailableNegative5200980 - 52011686541.94
cytochrome-c oxidase, cbb3-type subunit iiiCU102_26195Not AvailableNegative5201165 - 520207332567.6
ccoq/fixq family cbb3-type cytochrome c oxidase assembly chaperoneCU102_26200Not AvailableNegative5202064 - 52022376378.59
cytochrome-c oxidase, cbb3-type subunit iiCU102_26205Not AvailableNegative5202239 - 520297026708.6
cytochrome-c oxidase, cbb3-type subunit iCU102_26210Not AvailableNegative5202974 - 520463261436.2
hypothetical proteinCU102_26215Not AvailableNegative5204689 - 52048445386.9
nore accessory protein for nitric oxide reductaseCU102_26220Not AvailablePositive5204980 - 520551919838.7

Displaying genes 5051 – 5060 of 5617 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.