Phyllobacterium brassicacearum strain STM 196

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Phyllobacteriaceae

Genus

Phyllobacterium

Description

Phyllobacterium brassicacearum strain STM 196 is a Gram-negative, rod-shaped bacterium that resides in the rhizosphere, the region of soil adjacent to plant roots. This strain is characterized by having a single replicon, indicating a streamlined genomic structure. Notably, it has been documented to associate with several plant hosts, including Triticum aestivum (common wheat), Hordeum vulgare (barley), and Lathyrus oleraceus (grass pea). The association of P. brassicacearum STM 196 with these important agricultural crops highlights its potential role in plant-microbe interactions, particularly in the rhizosphere environment. Microbial communities in the rhizosphere are crucial for nutrient cycling, soil health, and plant growth promotion. Given its specific habitat and host associations, this strain may contribute to beneficial plant-microbe relationships, which can enhance the growth and resilience of these crops. The presence of P. brassicacearum STM 196 in the rhizosphere could suggest its involvement in processes such as nitrogen fixation, biocontrol of plant pathogens, or promotion of plant health. The strain's documented accession number is PGGO00000000.1, which provides a reference for further genomic studies that could explore its metabolic capabilities and ecological functions. Understanding the role of this bacterium within its ecological niche could inform agricultural practices aimed at improving crop yield and sustainability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyPhyllobacteriaceae
GenusPhyllobacterium
SpeciesPhyllobacterium brassicacearum
Strainstrain STM 196

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere
Biotic relationshipNot Available
Host(s)Triticum aestivum, Hordeum vulgare, Lathyrus oleraceus
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phyllobacterium brassicacearum strain STM 196

Gene Summary

Adenine Count

1238344 bp

Thymine Count

1234580 bp

Guanine Count

1656732 bp

Cytosine Count

1664338 bp

Genome Length

5793994 bp

Protein-coding Genes

5522 genes

Non-Coding Genes

95 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
enoyl-coa hydrataseCU102_16660Not AvailableNegative3272630 - 327344529810.3
hypothetical proteinCU102_16665Not AvailableNegative3273464 - 327401219914.0
phenylacetic acid degradation proteinCU102_16670Not AvailablePositive3274100 - 327452514900.2
(2fe-2s)-binding proteinCU102_16675Not AvailablePositive3275255 - 327572516412.6
aldehyde dehydrogenaseCU102_16680Not AvailablePositive3275727 - 327792277722.4
hypothetical proteinCU102_16685Not AvailableNegative3277968 - 327859421268.6
intradiol ring-cleavage dioxygenaseCU102_16690Not AvailableNegative3278715 - 327930521579.6
laci family transcriptional regulatorCU102_16695Not AvailableNegative3279438 - 328046936879.6
fatty acid desaturaseCU102_16700Not AvailablePositive3280623 - 328168140064.5
duf2147 domain-containing proteinCU102_16705Not AvailableNegative3281700 - 328210113904.7

Displaying genes 3241 – 3250 of 5617 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.