Pseudomonas sp. BRM28

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. BRM28 is characterized by having a single replicon, which is essential for its genetic stability and function. The genome of this strain is cataloged under the accession number PEFV00000000.1. This accession provides a framework for researchers to access genomic data, facilitating studies on its biological properties and ecological roles. Pseudomonas species are known for their metabolic versatility and ability to thrive in various environments. They are often found in soil, water, and plant surfaces, contributing to nutrient cycling and environmental health. The unique traits of Pseudomonas sp. BRM28 may offer insights into its ecological niche and potential applications in bioremediation or agriculture. Given the importance of Pseudomonas in various ecological contexts, understanding the specific characteristics of Pseudomonas sp. BRM28 could lead to enhanced knowledge of its interactions within ecosystems. Its single replicon may indicate a streamlined genomic architecture that can influence its adaptability and survival strategies in diverse environments. This adaptability can be crucial for its role in microbial communities, potentially impacting nutrient dynamics and interactions with other microbial species. Overall, the genomic data associated with Pseudomonas sp. BRM28 reinforces the importance of such microorganisms in ecological processes and highlights the potential for further research into their applications in environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. BRM28
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. BRM28
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. BRM28 scaffold12, whole genome shotgun sequence.

Gene Summary

Adenine Count

1052336 bp

Thymine Count

1053241 bp

Guanine Count

1905434 bp

Cytosine Count

1901840 bp

Genome Length

5913720 bp

Protein-coding Genes

5040 genes

Non-Coding Genes

291 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter substrate-binding proteinCR917_14130Not AvailablePositive2990762 - 299233657950.8
4-hydroxyphenylacetate catabolism regulatory protein hpaaCR917_14135Not AvailableNegative2992455 - 299335734363.3
4-hydroxyphenylacetate isomeraseCR917_14140Not AvailablePositive2993509 - 299418024369.4
2-hydroxyhepta-2,4-diene-1,7-dioate isomeraseCR917_14145Not AvailablePositive2994180 - 299495328703.9
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenaseCR917_14150Not AvailablePositive2994959 - 299641952765.3
3,4-dihydroxyphenylacetate 2,3-dioxygenaseCR917_14155Not AvailablePositive2996539 - 299739631725.9
5-carboxymethyl-2-hydroxymuconate isomeraseCR917_14160Not AvailablePositive2997416 - 299781114802.8
mfs transporterCR917_14165Not AvailablePositive2997862 - 299916646930.2
2-oxo-hepta-3-ene-1,7-dioic acid hydrataseCR917_14170Not AvailablePositive2999179 - 299998229025.8
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolaseCR917_14175Not AvailablePositive2999998 - 300080127948.9

Displaying genes 2901 – 2910 of 5331 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.