Agathobacter ruminis strain JK623

rodanaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Agathobacter

Description

Agathobacter ruminis strain JK623 is a Gram-negative, anaerobic bacterium characterized by its rod-shaped morphology. This strain is motile, possessing true flagella, which facilitates its movement in anaerobic environments. The optimal growth temperature for A. ruminis strain JK623 is 37°C, placing it within the mesophilic temperature range. A. ruminis strain JK623 has a single replicon, indicating a streamlined genomic structure, which may contribute to its adaptability in specific ecological niches. This strain is also classified as non-spore-forming, suggesting that it does not produce spores as a survival mechanism under adverse conditions. The ecological role of Agathobacter ruminis, particularly in the rumen of herbivores, is significant. Its anaerobic metabolism may play a crucial part in the fermentation process, contributing to the breakdown of complex carbohydrates. Understanding the traits of A. ruminis strain JK623 can provide insights into its potential applications in improving rumen function and overall animal health. The accessions associated with this strain, specifically PDYG00000000.1, serve as a reference for further studies and characterization of this microorganism.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusAgathobacter
SpeciesAgathobacter ruminis
Strainstrain JK623

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitymotile
Flagellar presenceYes
Number of membranesNot Available
Image of Agathobacter ruminis strain JK623
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agathobacter ruminis strain JK623 contig000136, whole genome

Gene Summary

Adenine Count

812134 bp

Thymine Count

802139 bp

Guanine Count

630809 bp

Cytosine Count

613542 bp

Genome Length

2858624 bp

Protein-coding Genes

2544 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinCSX02_04255Not AvailableNegative901443 - 90262444585.8
dna-binding response regulatorCSX02_04260Not AvailableNegative902608 - 90329726177.8
hypothetical proteinCSX02_04265Not AvailableNegative903314 - 90534175274.7
nadp-specific glutamate dehydrogenaseCSX02_04270Not AvailableNegative905313 - 90667149170.5
proton-coupled thiamine transporter yuajCSX02_04275Not AvailablePositive907094 - 90777725345.2
ferredoxinCSX02_04280Not AvailableNegative907816 - 90929453957.4
[fefe] hydrogenase h-cluster maturation gtpase hydfCSX02_04285Not AvailableNegative909307 - 91050343855.3
[fefe] hydrogenase h-cluster radical sam maturase hydgCSX02_04290Not AvailableNegative910538 - 91198054743.2
[fefe] hydrogenase h-cluster radical sam maturase hydeCSX02_04295Not AvailableNegative912010 - 91306240059.1
diaminopimelate dehydrogenaseCSX02_04300Not AvailableNegative913202 - 91418836015.0

Displaying genes 871 – 880 of 2622 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.