Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Agathobacter |
| Species | Agathobacter ruminis |
| Strain | strain JK623 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
812134 bp
Thymine Count
802139 bp
Guanine Count
630809 bp
Cytosine Count
613542 bp
Genome Length
2858624 bp
Protein-coding Genes
2544 genes
Non-Coding Genes
78 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CSX02_04255 | Not Available | Negative | 901443 - 902624 | 44585.8 |
| dna-binding response regulator | CSX02_04260 | Not Available | Negative | 902608 - 903297 | 26177.8 |
| hypothetical protein | CSX02_04265 | Not Available | Negative | 903314 - 905341 | 75274.7 |
| nadp-specific glutamate dehydrogenase | CSX02_04270 | Not Available | Negative | 905313 - 906671 | 49170.5 |
| proton-coupled thiamine transporter yuaj | CSX02_04275 | Not Available | Positive | 907094 - 907777 | 25345.2 |
| ferredoxin | CSX02_04280 | Not Available | Negative | 907816 - 909294 | 53957.4 |
| [fefe] hydrogenase h-cluster maturation gtpase hydf | CSX02_04285 | Not Available | Negative | 909307 - 910503 | 43855.3 |
| [fefe] hydrogenase h-cluster radical sam maturase hydg | CSX02_04290 | Not Available | Negative | 910538 - 911980 | 54743.2 |
| [fefe] hydrogenase h-cluster radical sam maturase hyde | CSX02_04295 | Not Available | Negative | 912010 - 913062 | 40059.1 |
| diaminopimelate dehydrogenase | CSX02_04300 | Not Available | Negative | 913202 - 914188 | 36015.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

