Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Agathobacter |
| Species | Agathobacter ruminis |
| Strain | strain JK623 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
812134 bp
Thymine Count
802139 bp
Guanine Count
630809 bp
Cytosine Count
613542 bp
Genome Length
2858624 bp
Protein-coding Genes
2544 genes
Non-Coding Genes
78 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioether cross-link-forming sciff peptide maturase | CSX02_03950 | Not Available | Positive | 830831 - 832291 | 54761.5 |
| protein translocase subunit secdf | CSX02_03955 | Not Available | Positive | 832316 - 834577 | 81486.0 |
| serine hydroxymethyltransferase | CSX02_03960 | Not Available | Positive | 834680 - 835924 | 45433.5 |
| serine--trna ligase | CSX02_03965 | Not Available | Positive | 835963 - 837249 | 48498.5 |
| flippase | CSX02_03970 | Not Available | Positive | 837319 - 838773 | 54635.2 |
| yiha family ribosome biogenesis gtp-binding protein | CSX02_03975 | Not Available | Positive | 838801 - 839622 | 30800.2 |
| adhesion lipoprotein | CSX02_03980 | Not Available | Positive | 839641 - 840573 | 35005.5 |
| abc transporter atp-binding protein | CSX02_03985 | Not Available | Positive | 840570 - 841403 | 31098.7 |
| abc transporter | CSX02_03990 | Not Available | Positive | 841406 - 842215 | 28992.6 |
| hypothetical protein | CSX02_03995 | Not Available | Positive | 842285 - 842686 | 16102.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

