Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Agathobacter |
| Species | Agathobacter ruminis |
| Strain | strain JK623 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
812134 bp
Thymine Count
802139 bp
Guanine Count
630809 bp
Cytosine Count
613542 bp
Genome Length
2858624 bp
Protein-coding Genes
2544 genes
Non-Coding Genes
78 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flagellar protein | CSX02_03900 | Not Available | Positive | 823702 - 824106 | 15465.5 |
| hypothetical protein | CSX02_03905 | Not Available | Positive | 824346 - 825023 | 24600.4 |
| hypothetical protein | CSX02_03910 | Not Available | Positive | 825029 - 825220 | 7200.83 |
| 4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinase | CSX02_03915 | Not Available | Positive | 825256 - 826122 | 31780.9 |
| gntr family transcriptional regulator | CSX02_03920 | Not Available | Positive | 826140 - 826817 | 25935.5 |
| duf1934 domain-containing protein | CSX02_03925 | Not Available | Positive | 826841 - 827284 | 16663.6 |
| hypothetical protein | CSX02_03930 | Not Available | Positive | 827352 - 827852 | 18795.0 |
| trigger factor | CSX02_03935 | Not Available | Positive | 827920 - 829083 | 43985.1 |
| asparagine--trna ligase | CSX02_03940 | Not Available | Positive | 829102 - 830493 | 53036.7 |
| six-cysteine peptide sciff | CSX02_03945 | Not Available | Positive | 830574 - 830717 | 5074.09 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

