Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Agathobacter |
| Species | Agathobacter ruminis |
| Strain | strain JK623 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
812134 bp
Thymine Count
802139 bp
Guanine Count
630809 bp
Cytosine Count
613542 bp
Genome Length
2858624 bp
Protein-coding Genes
2544 genes
Non-Coding Genes
78 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosome-binding factor rbfa | CSX02_03650 | Not Available | Positive | 770968 - 771339 | 14035.9 |
| dhh family phosphoesterase | CSX02_03655 | Not Available | Positive | 771340 - 772287 | 35482.1 |
| trna pseudouridine(55) synthase trub | CSX02_03660 | Not Available | Positive | 772290 - 773174 | 33406.2 |
| bifunctional riboflavin kinase/fad synthetase | CSX02_03665 | Not Available | Positive | 773171 - 774112 | 35924.4 |
| hydrolase | CSX02_03670 | Not Available | Positive | 774175 - 775386 | 44062.9 |
| 30s ribosomal protein s15 | CSX02_03675 | Not Available | Positive | 775538 - 775804 | 10040.3 |
| polyribonucleotide nucleotidyltransferase | CSX02_03680 | Not Available | Positive | 775975 - 778059 | 76304.0 |
| segregation/condensation protein a | CSX02_03685 | Not Available | Positive | 778196 - 778948 | 29223.7 |
| smc-scp complex subunit scpb | CSX02_03690 | Not Available | Positive | 778972 - 779541 | 21605.1 |
| hypothetical protein | CSX02_03695 | Not Available | Positive | 779647 - 780360 | 28084.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

