Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Agathobacter |
| Species | Agathobacter ruminis |
| Strain | strain JK623 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
812134 bp
Thymine Count
802139 bp
Guanine Count
630809 bp
Cytosine Count
613542 bp
Genome Length
2858624 bp
Protein-coding Genes
2544 genes
Non-Coding Genes
78 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 1-deoxy-d-xylulose-5-phosphate reductoisomerase | CSX02_03550 | Not Available | Positive | 748504 - 749646 | 42129.8 |
| rip metalloprotease rsep | CSX02_03555 | Not Available | Positive | 749658 - 750692 | 38294.9 |
| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | CSX02_03560 | Not Available | Positive | 750713 - 751768 | 37610.8 |
| polc-type dna polymerase iii | CSX02_03565 | Not Available | Positive | 751761 - 756245 | 169173.0 |
| duf5050 domain-containing protein | CSX02_03570 | Not Available | Negative | 756308 - 757330 | 39384.4 |
| prephenate dehydratase | CSX02_03575 | Not Available | Positive | 757444 - 758574 | 43210.4 |
| phosphatase | CSX02_03580 | Not Available | Positive | 758594 - 760099 | 57275.2 |
| rna degradosome polyphosphate kinase | CSX02_03585 | Not Available | Positive | 760117 - 762231 | 80427.0 |
| translation initiation factor if-3 | CSX02_03590 | Not Available | Positive | 762448 - 762942 | 18586.8 |
| 50s ribosomal protein l35 | CSX02_03595 | Not Available | Positive | 762964 - 763161 | 7488.52 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

