Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Agathobacter |
| Species | Agathobacter ruminis |
| Strain | strain JK623 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
812134 bp
Thymine Count
802139 bp
Guanine Count
630809 bp
Cytosine Count
613542 bp
Genome Length
2858624 bp
Protein-coding Genes
2544 genes
Non-Coding Genes
78 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator | CSX02_03350 | Not Available | Negative | 710851 - 711177 | 12640.3 |
| 23s rrna (uracil(1939)-c(5))-methyltransferase rlmd | CSX02_03355 | Not Available | Negative | 711216 - 712685 | 54717.4 |
| hypothetical protein | CSX02_03360 | Not Available | Negative | 712768 - 713052 | 10786.5 |
| dna helicase pcra | CSX02_03365 | Not Available | Negative | 713170 - 715398 | 84585.0 |
| trpr yerc/yecd | CSX02_03370 | Not Available | Positive | 715577 - 715870 | 11221.2 |
| duf1836 domain-containing protein | CSX02_03375 | Not Available | Negative | 715941 - 716573 | 24866.7 |
| small multidrug export protein | CSX02_03380 | Not Available | Negative | 716636 - 717112 | 17239.1 |
| histidinol-phosphate transaminase | CSX02_03385 | Not Available | Negative | 717105 - 718166 | 40354.4 |
| mate family efflux transporter | CSX02_03390 | Not Available | Positive | 718319 - 719698 | 49984.9 |
| transcriptional regulator | CSX02_03395 | Not Available | Negative | 719772 - 720143 | 13975.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

