Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Agathobacter |
| Species | Agathobacter ruminis |
| Strain | strain JK623 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
812134 bp
Thymine Count
802139 bp
Guanine Count
630809 bp
Cytosine Count
613542 bp
Genome Length
2858624 bp
Protein-coding Genes
2544 genes
Non-Coding Genes
78 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mate family efflux transporter | CSX02_00015 | Not Available | Negative | 2282 - 3613 | 48572.4 |
| had family hydrolase | CSX02_00020 | Not Available | Positive | 3765 - 4616 | 31270.1 |
| elongation factor p | CSX02_00025 | Not Available | Positive | 4691 - 5248 | 20376.1 |
| 5-methyltetrahydropteroyltriglutamate-- homocysteine s-methyltransferase | CSX02_00030 | Not Available | Negative | 5309 - 7561 | 86087.4 |
| lysr family transcriptional regulator | CSX02_00035 | Not Available | Positive | 7695 - 8591 | 34033.9 |
| hypothetical protein | CSX02_00040 | Not Available | Negative | 8634 - 9029 | 14605.5 |
| transcriptional repressor nrdr | CSX02_00045 | Not Available | Negative | 9136 - 9588 | 17704.3 |
| Ncrna_class:srp_rna | Not Available | Not Available | Positive | 9691 - 9951 | Not Available |
| redox-regulated atpase ychf | CSX02_00050 | Not Available | Negative | 9741 - 10841 | 39733.3 |
| plasmid stabilization protein | CSX02_00055 | Not Available | Negative | 11115 - 11429 | 12112.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

