Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Agathobacter |
| Species | Agathobacter ruminis |
| Strain | strain JK623 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
812134 bp
Thymine Count
802139 bp
Guanine Count
630809 bp
Cytosine Count
613542 bp
Genome Length
2858624 bp
Protein-coding Genes
2544 genes
Non-Coding Genes
78 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pilz domain-containing protein | CSX02_02170 | Not Available | Positive | 442697 - 443035 | 12996.4 |
| 3-phosphoshikimate 1-carboxyvinyltransferase | CSX02_02175 | Not Available | Positive | 443103 - 444332 | 45264.7 |
| prephenate dehydrogenase | CSX02_02180 | Not Available | Negative | 444342 - 445439 | 40915.4 |
| elongation factor g | CSX02_02185 | Not Available | Positive | 445612 - 447702 | 77713.8 |
| hypothetical protein | CSX02_02190 | Not Available | Positive | 447689 - 448969 | 48215.3 |
| isocitrate dehydrogenase (nadp(+)) | CSX02_02195 | Not Available | Positive | 449043 - 450254 | 45672.3 |
| redox-sensing transcriptional repressor rex | CSX02_02200 | Not Available | Positive | 450329 - 450979 | 24273.2 |
| hypothetical protein | CSX02_02205 | Not Available | Positive | 451015 - 451644 | 24799.7 |
| bifunctional adp-dependent nad(p)h-hydrate dehydratase/nad(p)h-hydrate epimerase | CSX02_02210 | Not Available | Positive | 451641 - 453134 | 54099.2 |
| yebc/pmpr family dna-binding transcriptional regulator | CSX02_02215 | Not Available | Positive | 453186 - 453917 | 26621.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

