Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Agathobacter |
| Species | Agathobacter ruminis |
| Strain | strain JK623 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
812134 bp
Thymine Count
802139 bp
Guanine Count
630809 bp
Cytosine Count
613542 bp
Genome Length
2858624 bp
Protein-coding Genes
2544 genes
Non-Coding Genes
78 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| holliday junction branch migration protein ruva | CSX02_01860 | Not Available | Negative | 368812 - 369420 | 21841.2 |
| trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miab | CSX02_01865 | Not Available | Negative | 369423 - 370847 | 54097.3 |
| glutamate-5-semialdehyde dehydrogenase | CSX02_01870 | Not Available | Negative | 370878 - 372131 | 45617.4 |
| 5-formyltetrahydrofolate cyclo-ligase | CSX02_01875 | Not Available | Negative | 372135 - 372710 | 22242.6 |
| thiamine biosynthesis protein apbe | CSX02_01880 | Not Available | Positive | 372786 - 373838 | 38913.1 |
| ferredoxin | CSX02_01885 | Not Available | Negative | 373878 - 374669 | 26948.9 |
| electron transport complex subunit rsxa | CSX02_01890 | Not Available | Negative | 374683 - 375306 | 22004.0 |
| fmn-binding protein | CSX02_01900 | Not Available | Negative | 376175 - 376780 | 21364.0 |
| na+-transporting nadh:ubiquinone oxidoreductase subunit d | CSX02_01905 | Not Available | Negative | 376773 - 377732 | 34164.9 |
| electron transport complex subunit rsxc | CSX02_01910 | Not Available | Negative | 377769 - 379097 | 48084.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

