Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Agathobacter |
| Species | Agathobacter ruminis |
| Strain | strain JK623 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
812134 bp
Thymine Count
802139 bp
Guanine Count
630809 bp
Cytosine Count
613542 bp
Genome Length
2858624 bp
Protein-coding Genes
2544 genes
Non-Coding Genes
78 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Phage holin | CSX02_09015 | Not Available | Positive | 1874916 - 1875347 | 15581.2 |
| Spor domain-containing protein | CSX02_09020 | Not Available | Positive | 1875347 - 1876840 | 54759.8 |
| hypothetical protein | CSX02_09025 | Not Available | Positive | 1876975 - 1877169 | 7429.01 |
| Site-specific integrase | CSX02_09030 | Not Available | Positive | 1877331 - 1879307 | 75326.8 |
| Site-specific recombinase for integration and excision | CSX02_09035 | Not Available | Positive | 1879304 - 1881007 | 65567.9 |
| Attr | Not Available | Not Available | Positive | 1885493 - 1885505 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | Positive | 62 - 179 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | Positive | 81 - 198 | Not Available |
| uracil phosphoribosyltransferase | CSX02_00005 | Not Available | Negative | 206 - 835 | 23031.4 |
| hemolysin | CSX02_00010 | Not Available | Negative | 898 - 2196 | 48735.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

