Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Agathobacter |
| Species | Agathobacter ruminis |
| Strain | strain JK623 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
812134 bp
Thymine Count
802139 bp
Guanine Count
630809 bp
Cytosine Count
613542 bp
Genome Length
2858624 bp
Protein-coding Genes
2544 genes
Non-Coding Genes
78 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidase u32 | CSX02_01160 | Not Available | Negative | 221617 - 222879 | 48154.2 |
| methyltransferase | CSX02_01165 | Not Available | Negative | 222876 - 223532 | 25084.6 |
| aminodeoxychorismate lyase | CSX02_01170 | Not Available | Negative | 223529 - 223936 | 14713.0 |
| ribonuclease j | CSX02_01175 | Not Available | Negative | 223945 - 225621 | 61625.6 |
| duf1292 domain-containing protein | CSX02_01180 | Not Available | Negative | 225656 - 225907 | 9767.06 |
| holliday junction resolvase ruvx | CSX02_01185 | Not Available | Negative | 225922 - 226353 | 16182.8 |
| duf965 domain-containing protein | CSX02_01190 | Not Available | Negative | 226357 - 226626 | 10439.3 |
| trna (n(6)-l-threonylcarbamoyladenosine(37)-c(2))- methylthiotransferase mtab | CSX02_01195 | Not Available | Negative | 226665 - 227999 | 50748.7 |
| hpr family phosphocarrier protein | CSX02_01200 | Not Available | Positive | 228085 - 228321 | 8710.57 |
| trna 4-thiouridine(8) synthase thii | CSX02_01205 | Not Available | Negative | 228379 - 229563 | 44159.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

