Agathobacter ruminis strain JK623

rodanaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Agathobacter

Description

Agathobacter ruminis strain JK623 is a Gram-negative, anaerobic bacterium characterized by its rod-shaped morphology. This strain is motile, possessing true flagella, which facilitates its movement in anaerobic environments. The optimal growth temperature for A. ruminis strain JK623 is 37°C, placing it within the mesophilic temperature range. A. ruminis strain JK623 has a single replicon, indicating a streamlined genomic structure, which may contribute to its adaptability in specific ecological niches. This strain is also classified as non-spore-forming, suggesting that it does not produce spores as a survival mechanism under adverse conditions. The ecological role of Agathobacter ruminis, particularly in the rumen of herbivores, is significant. Its anaerobic metabolism may play a crucial part in the fermentation process, contributing to the breakdown of complex carbohydrates. Understanding the traits of A. ruminis strain JK623 can provide insights into its potential applications in improving rumen function and overall animal health. The accessions associated with this strain, specifically PDYG00000000.1, serve as a reference for further studies and characterization of this microorganism.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusAgathobacter
SpeciesAgathobacter ruminis
Strainstrain JK623

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitymotile
Flagellar presenceYes
Number of membranesNot Available
Image of Agathobacter ruminis strain JK623
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agathobacter ruminis strain JK623 contig000136, whole genome

Gene Summary

Adenine Count

812134 bp

Thymine Count

802139 bp

Guanine Count

630809 bp

Cytosine Count

613542 bp

Genome Length

2858624 bp

Protein-coding Genes

2544 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trna lysidine(34) synthetase tilsCSX02_12735Not AvailablePositive2711362 - 271286156544.1
hypoxanthine phosphoribosyltransferaseCSX02_12740Not AvailablePositive2712867 - 271340320046.3
atp-dependent zinc metalloprotease ftshCSX02_12745Not AvailablePositive2713514 - 271525963964.9
dna-binding transcriptional regulatorCSX02_12750Not AvailablePositive2715575 - 271612320694.6
Trna-tyrNot AvailableNot AvailablePositive2716651 - 2716732Not Available
hypothetical proteinCSX02_12760Not AvailableNegative2716776 - 271887880429.5
1-acyl-sn-glycerol-3-phosphate acyltransferaseCSX02_12765Not AvailablePositive2719028 - 271976527768.7
hypothetical proteinCSX02_12770Not AvailablePositive2719959 - 27202079404.33
flagellar basal body and hook proteinCSX02_12775Not AvailablePositive2720355 - 272115529262.1
flagellar hook-basal body proteinCSX02_12780Not AvailablePositive2721172 - 272199029710.7

Displaying genes 2501 – 2510 of 2622 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.