Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Agathobacter |
| Species | Agathobacter ruminis |
| Strain | strain JK623 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
812134 bp
Thymine Count
802139 bp
Guanine Count
630809 bp
Cytosine Count
613542 bp
Genome Length
2858624 bp
Protein-coding Genes
2544 genes
Non-Coding Genes
78 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thiamine phosphate synthase | CSX02_12335 | Not Available | Positive | 2622526 - 2623164 | 22914.7 |
| bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | CSX02_12340 | Not Available | Positive | 2623161 - 2623967 | 28344.9 |
| phosphomethylpyrimidine synthase thic | CSX02_12345 | Not Available | Positive | 2623994 - 2625298 | 48084.9 |
| hypothetical protein | CSX02_12350 | Not Available | Positive | 2625470 - 2627404 | 75828.9 |
| hypothetical protein | CSX02_12355 | Not Available | Positive | 2627385 - 2629013 | 61127.7 |
| sam-dependent methyltransferase | CSX02_12360 | Not Available | Positive | 2629093 - 2629803 | 27125.9 |
| glycogen debranching enzyme | CSX02_12365 | Not Available | Positive | 2629807 - 2631987 | 83654.3 |
| Trna-pro | Not Available | Not Available | Positive | 2632040 - 2632113 | Not Available |
| 3-oxoacyl-acp reductase | CSX02_12375 | Not Available | Positive | 2632187 - 2632921 | 26134.4 |
| o-acetylhomoserine aminocarboxypropyltransferase | CSX02_12380 | Not Available | Positive | 2633044 - 2634327 | 46090.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

