Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Agathobacter |
| Species | Agathobacter ruminis |
| Strain | strain JK623 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
812134 bp
Thymine Count
802139 bp
Guanine Count
630809 bp
Cytosine Count
613542 bp
Genome Length
2858624 bp
Protein-coding Genes
2544 genes
Non-Coding Genes
78 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4-hydroxy-tetrahydrodipicolinate reductase | CSX02_11775 | Not Available | Negative | 2507725 - 2508486 | 26993.2 |
| 4-hydroxy-tetrahydrodipicolinate synthase | CSX02_11780 | Not Available | Negative | 2508572 - 2509456 | 31361.2 |
| cob(i)yrinic acid a c-diamide adenosyltransferase | CSX02_11785 | Not Available | Negative | 2509474 - 2509962 | 18387.7 |
| translational gtpase typa | CSX02_11790 | Not Available | Negative | 2509980 - 2511821 | 68364.7 |
| ll-diaminopimelate aminotransferase | CSX02_11795 | Not Available | Negative | 2511892 - 2513109 | 44823.0 |
| antitermination regulator | CSX02_11800 | Not Available | Negative | 2513136 - 2513678 | 20519.1 |
| type i glutamate--ammonia ligase | CSX02_11805 | Not Available | Negative | 2513694 - 2514959 | 47855.9 |
| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | CSX02_11810 | Not Available | Negative | 2514961 - 2515761 | 29224.6 |
| hypothetical protein | CSX02_11815 | Not Available | Negative | 2515765 - 2516424 | 25055.1 |
| hypothetical protein | CSX02_11820 | Not Available | Positive | 2516553 - 2517353 | 29358.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

