Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Agathobacter |
| Species | Agathobacter ruminis |
| Strain | strain JK623 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
812134 bp
Thymine Count
802139 bp
Guanine Count
630809 bp
Cytosine Count
613542 bp
Genome Length
2858624 bp
Protein-coding Genes
2544 genes
Non-Coding Genes
78 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sam-dependent methyltransferase | CSX02_11275 | Not Available | Positive | 2387273 - 2387941 | 24912.7 |
| hypothetical protein | CSX02_11280 | Not Available | Positive | 2387948 - 2388562 | 22343.5 |
| rod shape-determining protein | CSX02_11285 | Not Available | Positive | 2388746 - 2389741 | 35292.0 |
| flagellar biosynthesis anti-sigma factor flgm | CSX02_11290 | Not Available | Positive | 2389993 - 2390286 | 10544.3 |
| flagellar protein flgn | CSX02_11295 | Not Available | Positive | 2390304 - 2390816 | 18683.2 |
| flagellar biosynthesis protein flgk | CSX02_11300 | Not Available | Positive | 2390836 - 2392662 | 67847.1 |
| flagellar hook-associated protein flgk | CSX02_11305 | Not Available | Positive | 2392725 - 2394578 | 68298.2 |
| flagellar hook-associated protein 3 | CSX02_11310 | Not Available | Positive | 2394602 - 2396098 | 56528.3 |
| flagellar assembly protein fliw | CSX02_11315 | Not Available | Positive | 2396139 - 2396606 | 17469.1 |
| carbon storage regulator | CSX02_11320 | Not Available | Positive | 2396608 - 2396829 | 8210.03 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

