Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Agathobacter |
| Species | Agathobacter ruminis |
| Strain | strain JK623 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
812134 bp
Thymine Count
802139 bp
Guanine Count
630809 bp
Cytosine Count
613542 bp
Genome Length
2858624 bp
Protein-coding Genes
2544 genes
Non-Coding Genes
78 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iii secretion protein | CSX02_06325 | Not Available | Positive | 1319922 - 1320701 | 28726.5 |
| flagellar biosynthesis protein flhb | CSX02_06330 | Not Available | Positive | 1320721 - 1321830 | 41356.1 |
| dna-binding response regulator | CSX02_06335 | Not Available | Positive | 1322177 - 1322839 | 24948.3 |
| atp-binding protein | CSX02_06340 | Not Available | Positive | 1322836 - 1323864 | 39665.1 |
| abc transporter atp-binding protein | CSX02_06345 | Not Available | Positive | 1323940 - 1324704 | 28029.0 |
| abc transporter permease | CSX02_06350 | Not Available | Positive | 1324694 - 1326682 | 74116.0 |
| 1,4-beta-xylanase | CSX02_06355 | Not Available | Positive | 1326760 - 1327779 | 38888.4 |
| abc transporter atp-binding protein | CSX02_06360 | Not Available | Positive | 1327862 - 1328617 | 27473.0 |
| abc transporter permease | CSX02_06365 | Not Available | Positive | 1328611 - 1329537 | 33422.5 |
| chemotaxis protein | CSX02_06370 | Not Available | Positive | 1329723 - 1331744 | 72485.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

