Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Agathobacter |
| Species | Agathobacter ruminis |
| Strain | strain JK623 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
812134 bp
Thymine Count
802139 bp
Guanine Count
630809 bp
Cytosine Count
613542 bp
Genome Length
2858624 bp
Protein-coding Genes
2544 genes
Non-Coding Genes
78 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycogen synthase glga | CSX02_06125 | Not Available | Positive | 1280577 - 1282040 | 55825.4 |
| hypothetical protein | CSX02_06130 | Not Available | Positive | 1282053 - 1283261 | 45548.6 |
| hypothetical protein | CSX02_06135 | Not Available | Positive | 1283272 - 1283961 | 25467.5 |
| hypothetical protein | CSX02_06140 | Not Available | Negative | 1284101 - 1284979 | 34053.5 |
| spermidine/putrescine abc transporter permease/substrate-binding protein potcd | CSX02_06145 | Not Available | Negative | 1285106 - 1286947 | 69149.2 |
| abc transporter permease | CSX02_06150 | Not Available | Negative | 1286941 - 1287765 | 30456.7 |
| spermidine/putrescine abc transporter atp-binding protein | CSX02_06155 | Not Available | Negative | 1287758 - 1288834 | 40097.2 |
| Trna-thr | Not Available | Not Available | Positive | 1288984 - 1289056 | Not Available |
| hypothetical protein | CSX02_06165 | Not Available | Positive | 1289088 - 1289411 | 11666.1 |
| hypothetical protein | CSX02_06170 | Not Available | Positive | 1289487 - 1290128 | 25321.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

