Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Agathobacter |
| Species | Agathobacter ruminis |
| Strain | strain JK623 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
812134 bp
Thymine Count
802139 bp
Guanine Count
630809 bp
Cytosine Count
613542 bp
Genome Length
2858624 bp
Protein-coding Genes
2544 genes
Non-Coding Genes
78 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| asp23/gls24 family envelope stress response protein | CSX02_06075 | Not Available | Positive | 1271722 - 1272093 | 13015.8 |
| transcription antitermination factor nusb | CSX02_06080 | Not Available | Positive | 1272225 - 1272620 | 15344.2 |
| exodeoxyribonuclease vii large subunit | CSX02_06085 | Not Available | Positive | 1272613 - 1273824 | 45672.1 |
| exodeoxyribonuclease vii small subunit | CSX02_06090 | Not Available | Positive | 1273811 - 1274029 | 8332.86 |
| polyprenyl synthetase family protein | CSX02_06095 | Not Available | Positive | 1274029 - 1274922 | 33178.0 |
| 1-deoxy-d-xylulose-5-phosphate synthase | CSX02_06100 | Not Available | Positive | 1274942 - 1276795 | 68371.3 |
| tlya family rrna (cytidine-2'-o)-methyltransferase | CSX02_06105 | Not Available | Positive | 1276792 - 1277598 | 29679.0 |
| nad(+) kinase | CSX02_06110 | Not Available | Positive | 1277595 - 1278419 | 30941.5 |
| arginine repressor | CSX02_06115 | Not Available | Positive | 1278434 - 1278883 | 16587.2 |
| dna repair protein recn | CSX02_06120 | Not Available | Positive | 1278907 - 1280580 | 62120.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

