Agathobacter ruminis strain JK623

rodanaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Agathobacter

Description

Agathobacter ruminis strain JK623 is a Gram-negative, anaerobic bacterium characterized by its rod-shaped morphology. This strain is motile, possessing true flagella, which facilitates its movement in anaerobic environments. The optimal growth temperature for A. ruminis strain JK623 is 37°C, placing it within the mesophilic temperature range. A. ruminis strain JK623 has a single replicon, indicating a streamlined genomic structure, which may contribute to its adaptability in specific ecological niches. This strain is also classified as non-spore-forming, suggesting that it does not produce spores as a survival mechanism under adverse conditions. The ecological role of Agathobacter ruminis, particularly in the rumen of herbivores, is significant. Its anaerobic metabolism may play a crucial part in the fermentation process, contributing to the breakdown of complex carbohydrates. Understanding the traits of A. ruminis strain JK623 can provide insights into its potential applications in improving rumen function and overall animal health. The accessions associated with this strain, specifically PDYG00000000.1, serve as a reference for further studies and characterization of this microorganism.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusAgathobacter
SpeciesAgathobacter ruminis
Strainstrain JK623

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitymotile
Flagellar presenceYes
Number of membranesNot Available
Image of Agathobacter ruminis strain JK623
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agathobacter ruminis strain JK623 contig000136, whole genome

Gene Summary

Adenine Count

812134 bp

Thymine Count

802139 bp

Guanine Count

630809 bp

Cytosine Count

613542 bp

Genome Length

2858624 bp

Protein-coding Genes

2544 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
asp23/gls24 family envelope stress response proteinCSX02_06075Not AvailablePositive1271722 - 127209313015.8
transcription antitermination factor nusbCSX02_06080Not AvailablePositive1272225 - 127262015344.2
exodeoxyribonuclease vii large subunitCSX02_06085Not AvailablePositive1272613 - 127382445672.1
exodeoxyribonuclease vii small subunitCSX02_06090Not AvailablePositive1273811 - 12740298332.86
polyprenyl synthetase family proteinCSX02_06095Not AvailablePositive1274029 - 127492233178.0
1-deoxy-d-xylulose-5-phosphate synthaseCSX02_06100Not AvailablePositive1274942 - 127679568371.3
tlya family rrna (cytidine-2'-o)-methyltransferaseCSX02_06105Not AvailablePositive1276792 - 127759829679.0
nad(+) kinaseCSX02_06110Not AvailablePositive1277595 - 127841930941.5
arginine repressorCSX02_06115Not AvailablePositive1278434 - 127888316587.2
dna repair protein recnCSX02_06120Not AvailablePositive1278907 - 128058062120.8

Displaying genes 1231 – 1240 of 2622 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.