Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Agathobacter |
| Species | Agathobacter ruminis |
| Strain | strain JK623 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
812134 bp
Thymine Count
802139 bp
Guanine Count
630809 bp
Cytosine Count
613542 bp
Genome Length
2858624 bp
Protein-coding Genes
2544 genes
Non-Coding Genes
78 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytidyltransferase | CSX02_05615 | Not Available | Positive | 1168839 - 1170134 | 48255.0 |
| 3-deoxy-8-phosphooctulonate synthase | CSX02_05620 | Not Available | Positive | 1170170 - 1170943 | 28108.0 |
| hypothetical protein | CSX02_05625 | Not Available | Positive | 1170940 - 1172502 | 61173.9 |
| hypothetical protein | CSX02_05630 | Not Available | Positive | 1172495 - 1173502 | 39087.1 |
| hypothetical protein | CSX02_05635 | Not Available | Positive | 1174435 - 1174677 | 9238.36 |
| hypothetical protein | CSX02_05640 | Not Available | Positive | 1174692 - 1176272 | 60945.2 |
| 3-deoxy-d-manno-octulosonate 8-phosphate phosphatase | CSX02_05645 | Not Available | Positive | 1176302 - 1176775 | 17459.1 |
| acetylesterase | CSX02_05650 | Not Available | Positive | 1176814 - 1177653 | 31489.6 |
| hypothetical protein | CSX02_05655 | Not Available | Positive | 1177916 - 1178137 | 8288.34 |
| hypothetical protein | CSX02_05660 | Not Available | Positive | 1178200 - 1179423 | 45432.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

