Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Agathobacter |
| Species | Agathobacter ruminis |
| Strain | strain JK623 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
812134 bp
Thymine Count
802139 bp
Guanine Count
630809 bp
Cytosine Count
613542 bp
Genome Length
2858624 bp
Protein-coding Genes
2544 genes
Non-Coding Genes
78 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| eama family transporter | CSX02_04960 | Not Available | Negative | 1027794 - 1028705 | 33519.1 |
| n-carbamoylputrescine amidase | CSX02_04965 | Not Available | Negative | 1028733 - 1029608 | 33300.3 |
| agmatine deiminase | CSX02_04970 | Not Available | Negative | 1029612 - 1030718 | 41000.4 |
| carboxynorspermidine decarboxylase | CSX02_04975 | Not Available | Negative | 1030740 - 1031885 | 42695.9 |
| saccharopine dehydrogenase | CSX02_04980 | Not Available | Negative | 1031908 - 1033167 | 46839.0 |
| polyamine aminopropyltransferase | CSX02_04985 | Not Available | Negative | 1033169 - 1034041 | 34190.6 |
| arginine decarboxylase | CSX02_04990 | Not Available | Negative | 1034047 - 1035498 | 53335.4 |
| hypothetical protein | CSX02_04995 | Not Available | Negative | 1035879 - 1036478 | 21736.2 |
| hypothetical protein | CSX02_05000 | Not Available | Negative | 1036491 - 1036925 | 17212.0 |
| aac(3) family n-acetyltransferase | CSX02_05005 | Not Available | Negative | 1037102 - 1037896 | 29761.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

