Paremcibacter congregatus strain ZYL 558

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Emcibacterales

Family

Emcibacteraceae

Genus

Paremcibacter

Description

Paremcibacter congregatus strain ZYL 558 is characterized by a single replicon, indicating its genomic structure is likely simpler than organisms with multiple replicons. The strain is cataloged under the accession number PDEM00000000.1, which serves as a reference for its genomic data in biological databases. The singular replicon suggests that Paremcibacter congregatus may exhibit a streamlined genomic organization that can be advantageous for specific ecological niches, potentially allowing for efficient replication and resource utilization. Such traits are often associated with microorganisms that thrive in specialized environments, where rapid adaptation to local conditions is essential for survival and proliferation. In a broader biological context, understanding the genomic characteristics of strains like ZYL 558 can provide insights into their ecological roles. The streamlined genome may reflect adaptations to particular environmental pressures or resource availability, which can influence their interactions within microbial communities. This can have implications for nutrient cycling, symbiotic relationships, or even pathogenicity, depending on the specific habitat in which the strain is found. Overall, the genomic features of Paremcibacter congregatus strain ZYL 558, including its single replicon and associated accession number, contribute valuable information to the understanding of its potential ecological and biological significance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderEmcibacterales
FamilyEmcibacteraceae
GenusParemcibacter
SpeciesParemcibacter congregatus
Strainstrain ZYL 558

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paremcibacter congregatus strain ZYL 558, whole genome shotgun

Gene Summary

Adenine Count

997819 bp

Thymine Count

1012369 bp

Guanine Count

1092971 bp

Cytosine Count

1045259 bp

Genome Length

4148618 bp

Protein-coding Genes

3538 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tonb-dependent receptorCRD36_01540Not AvailablePositive385062 - 38753090581.4
amidohydrolase 3CRD36_01545Not AvailablePositive387552 - 38935466087.8
hydrophobe/amphiphile efflux-1 family rnd transporterCRD36_01550Not AvailableNegative389517 - 392636112745.0
efflux transporter periplasmic adaptor subunitCRD36_01555Not AvailableNegative392662 - 39381641598.2
tetr family transcriptional regulatorCRD36_01560Not AvailablePositive393974 - 39459123608.6
hypothetical proteinCRD36_01565Not AvailablePositive394809 - 39577736690.8
tonb-dependent receptorCRD36_01570Not AvailablePositive395928 - 39825884985.2
pqq-dependent dehydrogenase, methanol/ethanol familyCRD36_01575Not AvailablePositive398350 - 40047678095.3
Ncrna_class:srp_rnaNot AvailableNot AvailablePositive398785 - 398881Not Available
tonb-dependent receptorCRD36_01580Not AvailablePositive400517 - 40260477062.4

Displaying genes 351 – 360 of 3614 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.