Bacteroides fragilis strain 12905

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides fragilis strain 12905 is a Gram-negative, rod-shaped bacterium that is classified as a chemoorganotroph, indicating that it derives energy from organic compounds. This organism is strictly anaerobic, thriving in environments devoid of oxygen, and is commonly found in host-associated habitats. It has a single replicon and features a double membrane structure. The strain exhibits a free-living biotic relationship and can inhabit various hosts, including Homo sapiens, Gallus gallus, Metazoa, Equidae, and Serpentes. Its optimal growth temperature is 37°C, placing it in the mesophilic temperature range, which is conducive to its survival in warm-blooded hosts. Bacteroides fragilis strain 12905 is recognized for its pathogenicity in humans, being implicated in several serious health conditions. These include bacteremia, abscesses, various gastrointestinal disorders such as diarrhea and colitis, as well as more severe outcomes like septicemia, colorectal cancer, and local tissue infections. The strain's ability to cause intraabdominal abscesses and its involvement in anaerobic infections highlight its clinical significance. The ecological insight into Bacteroides fragilis strain 12905 reveals its dual role in the microbiota of its hosts. While it can contribute to pathologies under certain conditions, it also plays a part in the normal gut flora, suggesting a complex interplay between the bacterium and host health. Its free-living nature and association with multiple host species underscore its adaptability and potential impact on both individual health and broader ecological systems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis
Strainstrain 12905

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides fragilis strain 12905
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Metazoa
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityHuman

Genome Summary

Bacteroides fragilis strain 12905 contig0151, whole genome shotgun

Gene Summary

Adenine Count

1517870 bp

Thymine Count

1567793 bp

Guanine Count

1203986 bp

Cytosine Count

1145244 bp

Genome Length

5436953 bp

Protein-coding Genes

4392 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp-dependent zinc metalloprotease ftsh 2CQW34_04230Not AvailablePositive5131318 - 513262550115.1
hypothetical proteinCQW34_04231Not AvailablePositive5132637 - 513440368155.0
putative alginate biosynthesis protein, alga-likeCQW34_04232Not AvailableNegative5134542 - 513559139536.6
hypothetical proteinCQW34_04233Not AvailableNegative5135607 - 513603516708.0
ompa family proteinCQW34_04234Not AvailableNegative5136063 - 513716041448.8
gldm c-terminal domain proteinCQW34_04235Not AvailableNegative5137168 - 513848448538.6
putative gliding motility-associated protein, gldl-likeCQW34_04236Not AvailableNegative5138496 - 513900819793.2
hypothetical proteinCQW34_04237Not AvailableNegative5139115 - 513969020764.1
hypothetical proteinCQW34_04238Not AvailableNegative5139730 - 514101645889.9
putative exopolysaccharide biosynthesis protein, ybjh-likeCQW34_04239Not AvailableNegative5141042 - 514228346165.4

Displaying genes 4231 – 4240 of 4470 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Ad pathologiesCausesPMC10482867
DiarrheaCausesPMC13367044
ColitisCausesPMC13367044
Tumor formationCausesPMC13367044
Anaerobic bacteremiaCausesPMC5704556
Intraabdominal abscessesCausesPMC5704556
Colorectal cancerCausesPMC11704243
CrcCausesPMC11704243
BacteremiaCausesPMC8554563
SepticemiaCausesPMC8554563

Displaying health effects 1 – 10 of 19 in total