Bacteroides fragilis strain 12905

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides fragilis strain 12905 is a Gram-negative, rod-shaped bacterium that is classified as a chemoorganotroph, indicating that it derives energy from organic compounds. This organism is strictly anaerobic, thriving in environments devoid of oxygen, and is commonly found in host-associated habitats. It has a single replicon and features a double membrane structure. The strain exhibits a free-living biotic relationship and can inhabit various hosts, including Homo sapiens, Gallus gallus, Metazoa, Equidae, and Serpentes. Its optimal growth temperature is 37°C, placing it in the mesophilic temperature range, which is conducive to its survival in warm-blooded hosts. Bacteroides fragilis strain 12905 is recognized for its pathogenicity in humans, being implicated in several serious health conditions. These include bacteremia, abscesses, various gastrointestinal disorders such as diarrhea and colitis, as well as more severe outcomes like septicemia, colorectal cancer, and local tissue infections. The strain's ability to cause intraabdominal abscesses and its involvement in anaerobic infections highlight its clinical significance. The ecological insight into Bacteroides fragilis strain 12905 reveals its dual role in the microbiota of its hosts. While it can contribute to pathologies under certain conditions, it also plays a part in the normal gut flora, suggesting a complex interplay between the bacterium and host health. Its free-living nature and association with multiple host species underscore its adaptability and potential impact on both individual health and broader ecological systems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis
Strainstrain 12905

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides fragilis strain 12905
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Metazoa
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityHuman

Genome Summary

Bacteroides fragilis strain 12905 contig0151, whole genome shotgun

Gene Summary

Adenine Count

1517870 bp

Thymine Count

1567793 bp

Guanine Count

1203986 bp

Cytosine Count

1145244 bp

Genome Length

5436953 bp

Protein-coding Genes

4392 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cyclic nucleotide-binding domain proteinCQW34_01579Not AvailableNegative1939791 - 194036021848.3
helix-turn-helix domain proteinCQW34_01580Not AvailablePositive1940580 - 194089412251.5
protein of unknown function (duf3876)CQW34_01581Not AvailablePositive1940881 - 194117411220.2
helix-turn-helix domain proteinCQW34_01582Not AvailablePositive1941228 - 194152111558.1
acetyltransferase (gnat) family proteinCQW34_01583Not AvailablePositive1941614 - 194214120147.9
phage integrase sam-like domain proteinCQW34_01584Not AvailableNegative1942453 - 194367346939.3
Trna-lysNot AvailableNot AvailablePositive1943916 - 1943988Not Available
putative abc transporter atp-binding protein, yjjk-likeCQW34_01586Not AvailablePositive1944135 - 194579362557.6
putative tonb dependent receptor proteinCQW34_01587Not AvailablePositive1945989 - 1948778102042.0
protein of unknown function (duf5017)CQW34_01588Not AvailablePositive1948802 - 195070070462.3

Displaying genes 1601 – 1610 of 4470 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Ad pathologiesCausesPMC10482867
DiarrheaCausesPMC13367044
ColitisCausesPMC13367044
Tumor formationCausesPMC13367044
Anaerobic bacteremiaCausesPMC5704556
Intraabdominal abscessesCausesPMC5704556
Colorectal cancerCausesPMC11704243
CrcCausesPMC11704243
BacteremiaCausesPMC8554563
SepticemiaCausesPMC8554563

Displaying health effects 1 – 10 of 19 in total